BAC Information

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BAC

Clone NameMSMg01-489P07
Chromosome1 (Build37)
Map Location 175,968,746 - 175,969,337
singlet/doubletsinglet
Overlap genenone
Upstream geneGA_x5J8B7W5Q1F-395172-396104, Olfr1408, GA_x5J8B7W5Q1F-344462-343889, Olfr1406, Olfr218, Olfr1405-ps1, Olfr1404, Fcer1a, Olfr1403, Darc, Cadm3, Aim2, EG240921, BC094916, LOC623121, AI447904, E430029J22Rik, LOC665972, AI607873, Ifi204, EG666028, LOC100040462, Mnda, Ifi203, Ifi202b, Ifi205
Downstream geneOlfr433, Olfr432, GA_x5J8B7W3B3M-30314-31216, Olfr430, Olfr429, Olfr426, Olfr1528-ps1, Olfr244, Olfr424, Olfr423-ps1, Olfr421, Olfr422-ps1, Olfr420, Spna1, Olfr419, 1810030J14Rik, Olfr417, GA_x5J8B7W3B3M-312879-313274, GA_x5J8B7W3B3M-318013-318414, Olfr415, Olfr414, Olfr220, Fmn2, Grem2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-489P07.T7 (MSMg01no489_p07.b1)MSMg01-489P07.TJ (MSMg01no489_p07.g1)
ACCAG568309AG568310
length727713
length of high quality
(start - end)		592 (81 - 672)378 (333 - 710)
definitionCHROMAT_FILE: MSMg01no489_p07.b1 PHD_FILE: MSMg01no489_p07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:13:23 2005CHROMAT_FILE: MSMg01no489_p07.g1 PHD_FILE: MSMg01no489_p07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:13:23 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCTCTCCCCCCNTTCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTAA
AGAGGATCCGCGGAATTCTCTCTGCTTATCTACTGTCCTCATTTCACAAG
AGGGAAAGACAAGCAACAAAGGGGTTAAGGGACAAATTCAAAGATATTAA
GGAGAAAAAGCATCAGAAATAATGATCGAACCATGGGAAATGATGTGTAA
ATCCCATTTCTAAGCACCATCTGTCGTGTATATGGAGGAAAGGAGATCTG
ATACCAGACAGATACCCTCTTAAGTGTCCAGATCACAGTCAGCAACTTTG
TATGTTTTATTTCTTTTAATATTTAGTTTGAATTCATTATTATATTTTAT
GGATAAGAAAATATAGTTCAGAAGAGACTTTTTGCCCAGAATTCTATGAC
TTAAAGGAGAAAAATATCTGGATATGCACAGACATATTGCCCTCTCTTTG
CCACAGTCAGTAATTACTCATCTAACGCTGCATCGGATGTTTTCCTTTTT
AAAGAAGAGCAGAGCAGGAAAGAAAACTCAGGAGGCAGAGTGCTTGCCTT
GCACATTTAAGGTCCTAAGTTCAAAATGGTGTTGCAATCACAGAACCAAA
CTTTCTTAAACTGGAAAGAACCTGAAAACACATCCACACCCAGGACATGG
TTTGTAGGGAGTGAGAGAAGCCAAGAATGTTGCAATAGAGCAGACGGGAT
TGCCAAAATGCATCTGATGAATGTGTG

CTAATAATANCCCGATGCAGTGNGTAGCCGGGNGGTCGCCGGGTCAAAAA
AGGGAGGTGACACTATAGAATGCTCAAAAAGAATTCTTTAGNTGACCAAT
GAATTAAAGCAAGGGGCTCCATCCACTGACATTTAAACACTTTCACTGAA
AAGAATATTTACTTTCTAACATGAAGAATAGTGTTGAACATAAACAGAGC
ACATGCTGTTGAGAGCAATTTTATGATGTGCTTAAGTAAAAATATAACTA
ATTCAAATGCTATCTTTACAATATGGCCAAAGCAGATAAAAGTGGAAAAT
TAAATGTTGTTGAAAATAGATAATATTTATCTTATACCATAAAGGTATCA
CAGGTCTTTAGTTACCATTGGACTCACTGTGGGTAATTTTGAGGATACAA
ATCACAATATATCTTCACAAGATATAACAATCTTCTATTAGTAAATGATC
AAAAATACTAGCTGGCTCACAGTCCTTTCTTTTAAGTAGGCTCAAGTAGA
GTTACTTTGGTTAGAGTCATGTCCTTAAACATGGATATAGTAACATTCTT
CAACAGCAATGATTTCTGGAACCTGGGAGATATTGGTTGGATCCGATCTC
TTTTCTGTATAGTGGCCTGAGCTTCCTGGATTTCAATGGAGTATTTTAAT
GGAGAGAAGATTGTCTACTTATAAGACAATATGCAAAGTAATGAAAAGCT
ATGAACTTCGTAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no489_p07.b1 MSMg01no489_p07.b1 CHROMAT_FILE:
MSMg01no489_p07.b1 PHD_FILE: MSMg01no489_p07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:13:23 2005
         (592 letters)



>mm_chr1_175968707_175969698
          Length = 992

 Score = 1129 bits (584), Expect = 0.0
 Identities = 590/592 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tactgtcctcatttcacaagagggaaagacaagcaacaaaggggttaagggacaaattca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 631 tactgtcctcatttcacaagagggaaagacaagcaacaaaggggttaagggacaaattca 572

                                                                       
Query: 61  aagatattaaggagaaaaagcatcagaaataatgatcgaaccatgggaaatgatgtgtaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 571 aagatattaaggagaaaaagcatcagaaataatgatcgaaccatgggaaatgatgtgtaa 512

                                                                       
Query: 121 atcccatttctaagcaccatctgtcgtgtatatggaggaaaggagatctgataccagaca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 atcccatttctaagcaccatctgtcgtgtatatggaggaaaggagatctgataccagaca 452

                                                                       
Query: 181 gataccctcttaagtgtccagatcacagtcagcaactttgtatgttttatttcttttaat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 gataccctcttaagtgtccagatcacagtcagcaactttgtatgttttatttcttttaat 392

                                                                       
Query: 241 atttagtttgaattcattattatattttatggataagaaaatatagttcagaagagactt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 atttagtttgaattcattattatattttatggataagaaaatatagttcagaagagactt 332

                                                                       
Query: 301 tttgcccagaattctatgacttaaaggagaaaaatatctggatatgcacagacatattgc 360
           |||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct: 331 tttgcccagaattctatgacttaaaggagaaaaatatctggatatgtatagacatattgc 272

                                                                       
Query: 361 cctctctttgccacagtcagtaattactcatctaacgctgcatcggatgttttccttttt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 cctctctttgccacagtcagtaattactcatctaacgctgcatcggatgttttccttttt 212

                                                                       
Query: 421 aaagaagagcagagcaggaaagaaaactcaggaggcagagtgcttgccttgcacatttaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 211 aaagaagagcagagcaggaaagaaaactcaggaggcagagtgcttgccttgcacatttaa 152

                                                                       
Query: 481 ggtcctaagttcaaaatggtgttgcaatcacagaaccaaactttcttaaactggaaagaa 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 151 ggtcctaagttcaaaatggtgttgcaatcacagaaccaaactttcttaaactggaaagaa 92

                                                               
Query: 541 cctgaaaacacatccacacccaggacatggtttgtagggagtgagagaagcc 592
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 91  cctgaaaacacatccacacccaggacatggtttgtagggagtgagagaagcc 40


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 592
Length of database: 992
Length adjustment: 10
Effective length of query: 582
Effective length of database: 982
Effective search space:   571524
Effective search space used:   571524
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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