NNNNTTCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCATGTCATGATTCCATTTGATTCACAAACTAGACCTGCTTCT
GCTTCTGATTCCTCTTCTTCTGAACTTCTTCTCCCTCCTCCTCCTCCCCT
CCTCCTCTTTTTCAAGGGAGCATGTCACAAAGGTAGACAGGCAGATTGGT
GAGGACTACGAATTGACTGTGATTGGATTGTATGATGTTCAGTTTCCAAA
TGATCAGTAAAATGTAATAAAATATTATATTGGAATACAGACTGATCATT
TATCCCTTGAACATCACAGGCAATAGCCTTTAGGCTTCTGTTGTTGTAAG
ATTCCACAGAAGAAATTAATATCATAAACTATTGACATAAAAGACAAGGA
ATATATGACAAAAATGTAGGTATAACATTTGAAATTATTTATTGTAATAT
TTTGGATGGACAAAACCTTTGTTCTAATTGATAATGGGATACATACACAC
GCGCGCGCGCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTACACAT
TAATTGATTATCCTTTACCAATTTATTTTATTTTAAATTTAATTAATTTA
ATTTGCTTATTCATTGGTGTGCGTACCTGCTTACCTCTATGTATATATCA
CATACAGTTCTCAGAGAAGCCAGAAGACAGTTGTAGATACTCTGGTTCTT
GGGTCACAGATGGGTGTGAGTAAGTTTAGAACTGAAATCACGTTTTAAAG
AATAGCAATCTCCCTTTAATCGCCGN

NACGATGAAGTGGGAGGTCTGGCGGCCGCCTGGATCAAACATGGGGTGAC
CTATAGAAGTTTCAGAGAAAATCGCACCTGAGGAAACCAAATGGCTGAGA
AGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATTCAAATC
AAAACAACCCTGAGATTCCATCTCACACCAGTCATAATGGCTAAGATAAA
AAATTCAGGTGACAGCAGATGCTGGTAAGGATATGGAGAAAGAGGATCAC
TGCTCCATTGTTGGTGGGATTGCAAGCTTGTACAATCACTCTGGAAATCA
GTCTGGCGGTTCCTTAGATTATTGGACATAGTACTACCAGAAGATCCCGC
AATACCTCTTCTGGGCATATAGCCAGAAGATGTCCCAACCGATAAGAAGG
ACACATGCTCTACTATTTTCATAGCAGCCTTATTTATAATATCCAGAAGC
TGGAAAGAACCCAGATGCCCCGCAACAGAGGAATAGATACAGAAAATGTG
GTACATTTACACAATGGAGTACTAGTCAGCTATTAAAAAGAATGGATTTA
TTAAATTCCTAGGCAAATGCATGGACCGGGAAGGTATCATCCTGAGTGGG
GTAACCCAATCACAAAGGAACTCACACAATATGTACTCACTGATAAGTGG
ATATTATCCCATAAACTTAGGATACACAATTATCTTATATCTTAGGATAT
GAGATAAAATTTGCTAAACGCATGAATCTCAAGAAGAAAGAAGACCAAAG

Query= MSMg01no489_p18.b1 MSMg01no489_p18.b1 CHROMAT_FILE:
MSMg01no489_p18.b1 PHD_FILE: MSMg01no489_p18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:13:25 2005
         (589 letters)



>mm_chr1_116645627_116646615
          Length = 989

 Score = 1019 bits (527), Expect = 0.0
 Identities = 565/589 (95%), Gaps = 18/589 (3%)
 Strand = Plus / Plus

                                                                       
Query: 1   tccatttgattcacaaactagacctgcttctgcttctgattcctcttcttctgaacttct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tccatttgattcacaaactagacctgcttctgcttctgattcctcttcttctgaacttct 260

                                                                       
Query: 61  tctccctcctcctcctcccctcctcctctttttcaagggagcatgtcacaaaggtagaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tctccctcctcctcctcccctcctcctctttttcaagggagcatgtcacaaaggtagaca 320

                                                                       
Query: 121 ggcagattggtgaggactacgaattgactgtgattggattgtatgatgttcagtttccaa 180
           | |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 321 gccagattggtgaggactacgaattgactgtgattggattgtatgatgttcaatttccaa 380

                                                                       
Query: 181 atgatcagtaaaatgtaataaaatattatattggaatacagactgatcatttatcccttg 240
           |||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||
Sbjct: 381 atgatcagtaaaatgtaataaaatattatattggaacacagactgatcaattatcccttg 440

                                                                       
Query: 241 aacatcacaggcaatagcctttaggcttctgttgttgtaagattccacagaagaaattaa 300
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 441 aacatcacaggcaatagcctttgggcttctgttgttgtaagattccacagaagaaattaa 500

                                                                       
Query: 301 tatcataaactattgacataaaagacaaggaatatatgacaaaaatgtaggtataacatt 360
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tatcataaagtattgacataaaagacaaggaatatatgacaaaaatgtaggtataacatt 560

                                                                       
Query: 361 tgaaattatttattgtaatattttggatggacaaaacctttgttctaattgataatggga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgaaattatttattgtaatattttggatggacaaaacctttgttctaattgataatggga 620

                                                                       
Query: 421 tacatacacacgcgcgcgcgcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtacaca 480
           ||||||||||||                  ||||||||||||||||||||||||||||||
Sbjct: 621 tacatacacacg------------------tgtgtgtgtgtgtgtgtgtgtgtgtacaca 662

                                                                       
Query: 481 ttaattgattatcctttaccaatttattttattttaaatttaattaatttaatttgctta 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 663 ttaattgattatcctttaccaatttattttattttaaatttaattaatttaatttgctta 722

                                                            
Query: 541 ttcattggtgtgcgtacctgcttacctctatgtatatatcacatacagt 589
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 723 ttcattggtgtgcgtacctgcttacctctatgtatatatcacatacagt 771


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 589
Length of database: 989
Length adjustment: 10
Effective length of query: 579
Effective length of database: 979
Effective search space:   566841
Effective search space used:   566841
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)