BAC Information

Click to search

BAC

Clone NameMSMg01-489P22
Chromosome1 (Build37)
Map Location 69,614,680 - 69,615,238
singlet/doubletsinglet
Overlap geneIkzf2
Upstream geneErbb4, LOC667842, EG241084
Downstream geneSpag16
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-489P22.T7 (MSMg01no489_p22.b1)MSMg01-489P22.TJ (MSMg01no489_p22.g1)
ACCAG568339AG568340
length7751,206
length of high quality
(start - end)
559 (72 - 630)---
definitionCHROMAT_FILE: MSMg01no489_p22.b1 PHD_FILE: MSMg01no489_p22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:13:26 2005CHROMAT_FILE: MSMg01no489_p22.g1 PHD_FILE: MSMg01no489_p22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:13:26 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNCCTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCACTATGCTGACCGCCCCAAGTAACAAGGACAAAGCTTCTTTG
GACATCCGTCAAAGTGTCTACCTTAATACCCTAGTGTCTCCTCATTGGAC
CTGTTTTCATTTGCTAACAGAAGCAAGGACTGAAGCTATGAGCTACATGT
ACTCACTCTCCCCTGTAAATGATGCAGCTGCTACTACTGCTGAGCTCAGA
GTTTTTAATGCTGAGTCCCTGGTGTTCCAGTGGTCAACCTGCCAGTAGTT
TCCTGTTGGTCATCCCAGACTCCTTACAACACAGAGGAGGGGTACACTCA
TCCTCATAGGAACTAAAAGATGCTTAAGGAGGATATGTCATTCCTTCCTA
AGCTGCTTCTTAAGTGGATTTAGCAGAACACCTGACCAGTTTCTGTGATA
TCCCTGGTCACACCGTCTCAACAAAAACCTTTTTTGATGGAAAGAAATAT
AATAGATTCAAACCTACAGAATCTGTTCACATTCCGCATGTTCCATCATC
CAGAATCAGCTGGCTAAGTGGAGTAGTAAAATGGCCCATCACGGGGAAGG
CTCTTGCATGGCTGCCATANAGGCATGGCTGAGTGTGTCGTATGGATGCA
GCACATGGCCTAAGCTATCCTTTATATATGCGTCTAAGACTAAAGAGTTA
NGATGTTTACNATTATTGTATGCAGGCAAGGTGAAACAGCATAGTCATGA
ACTCTTATGAGGTGCCAAGCCTTAN
ACCGCCTCAGAAAGCGAGGGNTGGGAGACCACGCGGAGGCGGAGGGGCGT
TCTCATGTTTTCGTTAGGTGTGCGATCGGCGACCCTCCACCTCCACCCCA
AAGACAATGTGAACATATATATAACCATAATTAGACGATCCGTTGAGTGA
CGGTACACAGGCAGAAATAGTATGCGCCGGGTTCGACGATTTTCCTTTAC
AGTATTTTTGCTGCCGTTAGTTTGAGTTGTGTGATGTACTGAGCAGCCGT
ACGCAAAGAGACGGCGGGTGGCGAGTGTGAGCAGATCCTGAATCATACGC
GATGGCGGTGGTAAATCTAGTATGTGGTATAACGGGATTAAAATATGGTA
TTGAGAGGTGGCGCCGCATAAAAATAATGCCCCAAATTACAAGATTGTGG
GTGCGGCGCGGACAAGCAGAAGGTAATACCCCGCCGGAGGGGGAGCCGGT
GGGATCAACCGGCCACCCGTTTGGGGGGGGGGATTTTTGTCCCCCCGCCA
AAAAAAAAAAAGTGGGGGGGGGGGGGGGTCGATCGCAACCCTTAAAAATA
AGGGGAAATAGGGGGGAATATTTCTCCGCCGCGCGGGGAGAAAAAAAATG
GCCCGCGCTTGATCTAACCACTATAAAATAGCGGGCAGTATATACCAATC
TTATCCGGGTGGGAAAAGGATAATCTAACACAAGAAAATATGGTGTTGGT
CCTCATATAAAAGGGGGGCGCGCCGGGGGGAAAAAATAAAAAGAAAAAAA
ACTACACATGTGGGGAAGTGGGGAAACAAAATGTGATTTTGGGCGCCGCC
CCACCCCTATTGTTTAATAGACCACCGCAGGAGTTTATTTATTCAACCAA
GAGAGGTACAAGATGTGAGGCGCTTTTCGTGGAGACGAGAGAATATCCTT
CGCAGAGAAATAAAAAGAGAGTGGAACGTATCTTTTACCACAAAAAACAA
ACGGATGATATTCGTCTTATAACAAATATAGCGCAGACGCGTTCAGTTTG
CGTCTCGTACACAACGCTATTCTGTTTTGTTGTAACAACAGATCATAGAT
ACACACCCGCACTTCCTTTTATGCGCGGCGGCGTGTGTTCGTATCCAGGA
TAACTAATGAAGCTGTTTATGCTGCCGCACATAATGTAATCTGTGATCAC
ATCATCATATGTTCTGTCTCCAGCGTGGCGCTCGTAAATGCTGTAGATAT
ATATGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no489_p22.b1 MSMg01no489_p22.b1 CHROMAT_FILE:
MSMg01no489_p22.b1 PHD_FILE: MSMg01no489_p22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:13:26 2005
         (559 letters)



>mm_chr1_69614480_69615438
          Length = 959

 Score = 1013 bits (524), Expect = 0.0
 Identities = 550/559 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccccaagtaacaaggacaaagcttctttggacatccgtcaaagtgtctaccttaataccc 60
           ||||||| |||||| |||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 201 ccccaaggaacaagaacaaagcttcttaggacatccgtcaaagtgtctaccttaataccc 260

                                                                       
Query: 61  tagtgtctcctcattggacctgttttcatttgctaacagaagcaaggactgaagctatga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tagtgtctcctcattggacctgttttcatttgctaacagaagcaaggactgaagctatga 320

                                                                       
Query: 121 gctacatgtactcactctcccctgtaaatgatgcagctgctactactgctgagctcagag 180
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 321 gctacatgtactcactctcccctgtaactgatgcagctgctactactgctgagctcagag 380

                                                                       
Query: 181 tttttaatgctgagtccctggtgttccagtggtcaacctgccagtagtttcctgttggtc 240
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tttttaatgctgagtacctggtgttccagtggtcaacctgccagtagtttcctgttggtc 440

                                                                       
Query: 241 atcccagactccttacaacacagaggaggggtacactcatcctcataggaactaaaagat 300
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 441 atcccagactccttacaacacagaggaggggtagactcatcctcataggaactaaaagat 500

                                                                       
Query: 301 gcttaaggaggatatgtcattccttcctaagctgcttcttaagtggatttagcagaacac 360
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 501 gcttaaggaggatatgtcattccttcctaagctgcttcttaagtgaatttagcagaacac 560

                                                                       
Query: 361 ctgaccagtttctgtgatatccctggtcacaccgtctcaacaaaaaccttttttgatgga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctgaccagtttctgtgatatccctggtcacaccgtctcaacaaaaaccttttttgatgga 620

                                                                       
Query: 421 aagaaatataatagattcaaacctacagaatctgttcacattccgcatgttccatcatcc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aagaaatataatagattcaaacctacagaatctgttcacattccgcatgttccatcatcc 680

                                                                       
Query: 481 agaatcagctggctaagtggagtagtaaaatggcccatcacggggaaggctcttgcatgg 540
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 agaatcagcgggctaagtggagtagtaaaatggcccatcacggggaaggctcttgcatgg 740

                              
Query: 541 ctgccatanaggcatggct 559
           |||||||| ||||||||||
Sbjct: 741 ctgccatagaggcatggct 759


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 559
Length of database: 959
Length adjustment: 10
Effective length of query: 549
Effective length of database: 949
Effective search space:   521001
Effective search space used:   521001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)