Query= MSMg01no490_a20.b1 MSMg01no490_a20.b1 CHROMAT_FILE:
MSMg01no490_a20.b1 PHD_FILE: MSMg01no490_a20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:13:31 2005
(574 letters)
>mm_chr1_192985737_192986710
Length = 974
Score = 1013 bits (524), Expect = 0.0
Identities = 556/575 (96%), Gaps = 16/575 (2%)
Strand = Plus / Minus
Query: 1 agactcctggctgcacctggatgaggactccctctccatgatgtgggtgctctcagctat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 653 agactcctggctgcacctggatgaggactccctctccatgatgtgggtgctctcagctat 594
Query: 61 ggctgctgctctgcttgtgatacactcaagggtcggaaatgggagaggggatcagcacag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 593 ggctgctgctctgcttgtgatacactcaagggtcggaaatgggagaggggatcagcacag 534
Query: 121 gctattaaggcagtctggacttagcaattttgcacacacccgtgcacctgagactcacgt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533 gctattaaggcagtctggacttagcaattttgcacacacccgtgcacctgagactcacgt 474
Query: 181 gtctgtgcttgggtgtttgggtcatgtgtatatgtttttagagacagctatgagtatatt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 gtctgtgcttgggtgtttgggtcatgtgtatatgtttttagagacagctatgagtatatt 414
Query: 241 cctagc----tttttgatttagcatgccaacaatggaaacagttcaagtaacaaaatgag 296
|||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 cctagcaaaa----tgatttagcatgccaacaatggaaacagttcaagtaacaaaatgag 358
Query: 297 agttcatactatgtagtaggtgggttattcaggcagcacattttcctcataatgttgaaa 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 agttcatactatgtagtaggtgggttattcaggcagcacattttcctcataatgttgaaa 298
Query: 357 aggagcaaatcggagaataggttatcattgcattgataggagagttcagaaacaagacaa 416
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 297 aggagcaaatcggagaataggttatcattgcatttataggagagttcagaaacaagacaa 238
Query: 417 gaaagtaaaggaaaagcaaagacgtactgtgtgtgtgagagagagagagagagacagaga 476
|||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct: 237 gaaagtaaaggaaaagcaaagacgtactgtgtgtgt--gtgagagagagagagacagaga 180
Query: 477 cagagacagagacggggggatggaaggaccctgtgtgcatgtgtgagagagggaatatgg 536
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 179 cagagacagagacggggggatggaaggaccctgtgtgcatgtgtgagagagggaatatg- 121
Query: 537 tgtgtgtgtgtgtgtgtgtgagagaganagagaga 571
|||||||||||||||||||||| |||||||
Sbjct: 120 -----gtgtgtgtgtgtgtgagagagagagagaga 91
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 52
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 574
Length of database: 974
Length adjustment: 10
Effective length of query: 564
Effective length of database: 964
Effective search space: 543696
Effective search space used: 543696
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no490_a20.g1 MSMg01no490_a20.g1 CHROMAT_FILE:
MSMg01no490_a20.g1 PHD_FILE: MSMg01no490_a20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:13:31 2005
(667 letters)
>mm_chr1_192828966_192830032
Length = 1067
Score = 1253 bits (648), Expect = 0.0
Identities = 663/668 (99%), Gaps = 1/668 (0%)
Strand = Plus / Plus
Query: 1 tttcttgtcactgtgctgtgccactgtggtgggaggatggggttaacaacgtgaacttaa 60
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 tttcttgccactgtgctgtgccactgtggtgggaggatggggttaacaacgtgaacttaa 259
Query: 61 cctgcctttcacgggg-ttctgctggaactatgctgaaacctcttcactggacccccaac 119
|||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 260 cctgcctttcacggggtttctgctggaactatgctgaaacctcttcactggacctccaac 319
Query: 120 aaaagcgcaatctatgaagagtcttgagaaacagtgcttctgaggtcaagtctccactgt 179
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 320 aaaagcgcaatctatgaagagtcttgagaaacagtgcttccgaggtcaagtctccactgc 379
Query: 180 catgctgacatcgccctctgcaaatctcttttttaaagttttttgtttgtttgttttaaa 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 catgctgacatcgccctctgcaaatctcttttttaaagttttttgtttgtttgttttaaa 439
Query: 240 tcatacacacgtgtgcgggcgtgtacatgagtacagttgcccagggaggccacaagagtg 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 tcatacacacgtgtgcgggcgtgtacatgagtacagttgcccagggaggccacaagagtg 499
Query: 300 tggtggatccctgggacagttgtgaccacgcctgatgtggatattaggaacaaaactcag 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 tggtggatccctgggacagttgtgaccacgcctgatgtggatattaggaacaaaactcag 559
Query: 360 gtcttctacaggagcagtgcacactcctaactgctgagcccctttcccagcttactctta 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 gtcttctacaggagcagtgcacactcctaactgctgagcccctttcccagcttactctta 619
Query: 420 cattattttacatttattttctattgagtactgatgacagtgggctccattcttctatgg 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 cattattttacatttattttctattgagtactgatgacagtgggctccattcttctatgg 679
Query: 480 ctgtctctaagaccatatgatcgctttctaacttcccacacatatcagacaccaggattt 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 ctgtctctaagaccatatgatcgctttctaacttcccacacatatcagacaccaggattt 739
Query: 540 gtttttaaaggacatataaaattagcactaaaaaaataaatttattttaagtatgaaata 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 gtttttaaaggacatataaaattagcactaaaaaaataaatttattttaagtatgaaata 799
Query: 600 atgaagaacaggcacatagagaaattataaaagtagcaaaataagaacaggaatgaagac 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 800 atgaagaacaggcacatagagaaattataaaagtagcaaaataagaacaggaatgaagac 859
Query: 660 attagaca 667
||||||||
Sbjct: 860 attagaca 867
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 667
Length of database: 1067
Length adjustment: 10
Effective length of query: 657
Effective length of database: 1057
Effective search space: 694449
Effective search space used: 694449
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
