BAC Information

Click to search

BAC

Clone NameMSMg01-490D21
Chromosome1 (Build37)
Map Location 70,383,468 - 70,554,213
singlet/doubletdoublet
Overlap geneSpag16
Upstream geneEG241084, Ikzf2
Downstream geneA830006F12Rik, LOC100043210, EG667884, EG666083, LOC100042804, LOC100042809, Bard1, LOC667900, Abca12, LOC629101
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-490D21.T7 (MSMg01no490_d21.b1)MSMg01-490D21.TJ (MSMg01no490_d21.g1)
ACCAG568528AG568529
length752761
length of high quality
(start - end)		627 (75 - 701)637 (80 - 716)
definitionCHROMAT_FILE: MSMg01no490_d21.b1 PHD_FILE: MSMg01no490_d21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:13:46 2005CHROMAT_FILE: MSMg01no490_d21.g1 PHD_FILE: MSMg01no490_d21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:13:47 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(70,553,758 - 70,554,213)(70,383,468 - 70,384,104)
sequence
NAATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCCTGTGAATTCCCGGTCTCAGCAGGAATAGGATCCAGTCAAACC
AGAGCATCACTGGGCTGCTTCACAGGCATCCTACTGTTTCCTCACAATGA
ACAAACACATCCTATAGTGGGAAAGCTGCAGGAATTGAGCCTCTAAGGTT
GGCTGTCTGTAGACAGAAATTGATAGAGCTTGTGTCACCAGGAGGGGTTT
TCAGAATGAGAGGGCCACTAGTAGAGGCTATTCAGCAGAACTGTTTGGTG
CCTTCTTAATCCTAAATCAGCAAAGTGTGTTATTCGTTAATTTTCTGTTT
CTGTAATTAAGTATCATGGCTATGAACAGTTACAGAAGGAAGTGTTCATT
TTAGCTTTACAATGTTAGAGGGTTACAGACCATGATGACAGCATGGAGAC
ATGGCAGGAAGAAGCTGAGATCTCACATCTTAGACCATGAACACAAATCA
GGACCTACTGCAAGTAGAAGAATGTTACCATTCTCAAAGCTCAGGTCCCC
TCCAATGACATACTTCTGCCATTCAAGGCTGCACCCCCCGAATCTCTCCA
TACAGCTACTCCAATATGGAGCAAACATTCAAATGTCTAAGATTATGGGG
AGAGAGCCATGTCTCATTCAAACCAAAACACAAGGTGCACTTTTCGTAGA
AGCGGGAAAGGAGGGGTGGAGATGGGGCTCAGCATTAGGGAAAATGTACT
CA

NNAACAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTATGTCTGTGGGTTTAATCAA
GATGTATAAAAATATTCAGAAAATGTTACATCTGTTTTGAACATGTACAG
GTTTCTTTCTTGCCTTCATTTCCTAAACAATGCTATTAAACAACCATGTC
CATGCTATTTACATTGCATTAGGTATTACAAGAAACCTGGAGGCTATCTC
AGATTTGCATGAGGATGTGAGATATGCATGTAGGGATATGGGACTCTTTT
CACAAGGGACTTGAGCATCCACAGATTTTAGCTTCTGCAGGGGTTCTGGA
ACATCGCAATTCCCATGGAAAATGAAGACTATTTTCTATTTAAATATACT
CAGAAACACTAATTAGTGTCATTATGTAGTTTTGTGCCAGTTAATAACAT
GCATTATTTATGGAATAAATAATAATTTGTTATTTTGATCTAATTAATTG
TTTTGATAATATTTCACATATGCTTGATATTTAGTAAAATTTTTTGATAA
TCAAATATCAAGAAACTTTATTACTAAATTTCTCATAGTTTGTACTAGAG
ATGATTTATTGTGTTTTGATCTTTACCTATCTGTTGGTTCTATTACCCTG
CAAAATACCTCAGCCACAATCCTTTAAAGGTCTTGGTAACATGATGTAAT
AGAGTATAACAATACAAATTTTCAGGGTAATTTTATGTAATAAGGAGATT
ATGTCTCATTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no490_d21.b1 MSMg01no490_d21.b1 CHROMAT_FILE:
MSMg01no490_d21.b1 PHD_FILE: MSMg01no490_d21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:13:46 2005
         (627 letters)



>mm_chr1_70553758_70554784
          Length = 1027

 Score =  851 bits (440), Expect = 0.0
 Identities = 452/456 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cagcaggaataggatccagtcaaaccagagcatcactgggctgcttcacaggcatcctac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 cagcaggaataggatccagtcaaaccagagcatcactgggctgcttcacaggcatcctac 397

                                                                       
Query: 61  tgtttcctcacaatgaacaaacacatcctatagtgggaaagctgcaggaattgagcctct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 tgtttcctcacaatgaacaaacacatcctatagtgggaaagctgcaggaattgagcctct 337

                                                                       
Query: 121 aaggttggctgtctgtagacagaaattgatagagcttgtgtcaccaggaggggttttcag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 336 aaggttggctgtctgtagacagaaattgatagagcttgtgtcaccaggaggggttttcac 277

                                                                       
Query: 181 aatgagagggccactagtagaggctattcagcagaactgtttggtgccttcttaatccta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 aatgagagggccactagtagaggctattcagcagaactgtttggtgccttcttaatccta 217

                                                                       
Query: 241 aatcagcaaagtgtgttattcgttaattttctgtttctgtaattaagtatcatggctatg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 216 aatcagcaaagtgtgttattcgttaattttctgtttctgtaattaagtatcatggctatg 157

                                                                       
Query: 301 aacagttacagaaggaagtgttcattttagctttacaatgttagagggttacagaccatg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156 aacagttacagaaggaagtgttcattttagctttacaatgttagagggttacagaccatg 97

                                                                       
Query: 361 atgacagcatggagacatggcaggaagaagctgagatctcacatcttagaccatgaacac 420
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 96  atgacagcatggagacatggcagaaagaagctgagatctcacatcttagaccatgaacac 37

                                               
Query: 421 aaatcaggacctactgcaagtagaagaatgttacca 456
           ||||||| ||||||||||||||| ||||||||||||
Sbjct: 36  aaatcagtacctactgcaagtaggagaatgttacca 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 627
Length of database: 1027
Length adjustment: 10
Effective length of query: 617
Effective length of database: 1017
Effective search space:   627489
Effective search space used:   627489
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no490_d21.g1 MSMg01no490_d21.g1 CHROMAT_FILE:
MSMg01no490_d21.g1 PHD_FILE: MSMg01no490_d21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:13:47 2005
         (637 letters)



>mm_chr1_70383268_70384304
          Length = 1037

 Score = 1208 bits (625), Expect = 0.0
 Identities = 634/637 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tatgtctgtgggtttaatcaagatgtataaaaatattcagaaaatgttacatctgttttg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tatgtctgtgggtttaatcaagatgtataaaaatattcagaaaatgttacatctgttttg 260

                                                                       
Query: 61  aacatgtacaggtttctttcttgccttcatttcctaaacaatgctattaaacaaccatgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aacatgtacaggtttctttcttgccttcatttcctaaacaatgctattaaacaaccatgt 320

                                                                       
Query: 121 ccatgctatttacattgcattaggtattacaagaaacctggaggctatctcagatttgca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccatgctatttacattgcattaggtattacaagaaacctggaggctatctcagatttgca 380

                                                                       
Query: 181 tgaggatgtgagatatgcatgtagggatatgggactcttttcacaagggacttgagcatc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgaggatgtgagatatgcatgtagggatatgggactcttttcacaagggacttgagcatc 440

                                                                       
Query: 241 cacagattttagcttctgcaggggttctggaacatcgcaattcccatggaaaatgaagac 300
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 441 cacagattttagcttctgcaggggttctggaacatcgcaattcccatggataatgaagac 500

                                                                       
Query: 301 tattttctatttaaatatactcagaaacactaattagtgtcattatgtagttttgtgcca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tattttctatttaaatatactcagaaacactaattagtgtcattatgtagttttgtgcca 560

                                                                       
Query: 361 gttaataacatgcattatttatggaataaataataatttgttattttgatctaattaatt 420
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 561 gttaataacatgcattatttatggaataaataataatttgttatttttatctaattaatt 620

                                                                       
Query: 421 gttttgataatatttcacatatgcttgatatttagtaaaattttttgataatcaaatatc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gttttgataatatttcacatatgcttgatatttagtaaaattttttgataatcaaatatc 680

                                                                       
Query: 481 aagaaactttattactaaatttctcatagtttgtactagagatgatttattgtgttttga 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 681 aagaaactttattactaaatttctcatagtttgtactagagatgatttattatgttttga 740

                                                                       
Query: 541 tctttacctatctgttggttctattaccctgcaaaatacctcagccacaatcctttaaag 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tctttacctatctgttggttctattaccctgcaaaatacctcagccacaatcctttaaag 800

                                                
Query: 601 gtcttggtaacatgatgtaatagagtataacaataca 637
           |||||||||||||||||||||||||||||||||||||
Sbjct: 801 gtcttggtaacatgatgtaatagagtataacaataca 837


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 637
Length of database: 1037
Length adjustment: 10
Effective length of query: 627
Effective length of database: 1027
Effective search space:   643929
Effective search space used:   643929
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |