Query= MSMg01no490_g21.b1 MSMg01no490_g21.b1 CHROMAT_FILE:
MSMg01no490_g21.b1 PHD_FILE: MSMg01no490_g21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:14:01 2005
(275 letters)
>mm_chr1_140414816_140415490
Length = 675
Score = 485 bits (251), Expect = e-142
Identities = 266/271 (98%)
Strand = Plus / Minus
Query: 5 gaattcaagggtctcgggtggggtgggagggtgggatacgtgggaaggtttggaacaggg 64
||||||||||| | |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 475 gaattcaaggggcaggggtggggtgggagggtggggtacgtgggaaggtttggaacaggg 416
Query: 65 aaatgaggtaattatattacagtcttcgtttttaagttatttaaaataatcaactgccaa 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 aaatgaggtaattatattacagtcttcgtttttaagttatttaaaataatcaactgccaa 356
Query: 125 gttgattatggttatgatgagtttagactctgttaaagcattaaatttttcttccatgtt 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 gttgattatggttatgatgagtttagactctgttaaagcattaaatttttcttccatgtt 296
Query: 185 ctaatgtctacatgatgcagtgcatctttgaatgaagagacccggtacccgtcttgctgt 244
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 295 ctaatgtctacttgatgcagtgcatctttgaatgaagagacccggtacccgtcttgctgt 236
Query: 245 tggcatcagtcatccctctgatgtgttaatg 275
|||||||||||||||||||||||||||||||
Sbjct: 235 tggcatcagtcatccctctgatgtgttaatg 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 275
Length of database: 675
Length adjustment: 9
Effective length of query: 266
Effective length of database: 666
Effective search space: 177156
Effective search space used: 177156
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no490_g21.g1 MSMg01no490_g21.g1 CHROMAT_FILE:
MSMg01no490_g21.g1 PHD_FILE: MSMg01no490_g21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:14:01 2005
(528 letters)
>mm_chr1_140262575_140263503
Length = 929
Score = 930 bits (481), Expect = 0.0
Identities = 517/529 (97%), Gaps = 1/529 (0%)
Strand = Plus / Plus
Query: 1 aatagctcaatagactttccctttttctctagttgctgaaaaactcaggacctcattgtc 60
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aatagctcaatagactttccccttttctctagttgctgaaaaactcaggacctcattgtc 260
Query: 61 cacgtgtagttgtttaaaagccacgaggattctgctttcctgcaaaaacatgttcttttc 120
||||||||||||||||||||||| |||||||||||||||||| |||| ||||||||||||
Sbjct: 261 cacgtgtagttgtttaaaagccatgaggattctgctttcctggaaaaccatgttcttttc 320
Query: 121 tttggtaaaaatcttatccaaaattgggacttcatcaataagccactttaatccatttcc 180
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 321 tttggtaaaaatcttatccaaaattgggacttaatcaataagccactttaatccatttcc 380
Query: 181 aaaggtggtgagacacctaaagagaatttgaaagcagtaattatttataaaatagttcca 240
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaaggtggcgagacacctaaagagaatttgaaagcagtaattatttataaaatagttcca 440
Query: 241 tttaacacatagatttcagaaaaacacttttgtcattattgcttaataaacagatccaaa 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 441 tttaacacatagatttcagaaaaacacttttgtcattattgcttaataaacagatctaaa 500
Query: 301 aagtattaaacaccacaatattctttaattaacagtataaataataacattaaaattgat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aagtattaaacaccacaatattctttaattaacagtataaataataacattaaaattgat 560
Query: 361 ttaagaatgtaatgggctcagctagtaagggccatactctgaaaaaaaaa-gtatttact 419
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 561 ttaagaatgtaatgggctcagctagtaagggccatactctgaaaaaaaaaagtatttact 620
Query: 420 gtttcaaatattgaagaaatggtatcctatgtgtgtgtagttatagaaacacatcaatga 479
|||||||||| |||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct: 621 gtttcaaatagtgaagaaatggtattctatgtgtgtggagttatagaaacacatcaatga 680
Query: 480 tgatcacattatatacataaaatgaatccagcatcagacagcagccatg 528
|||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 681 tgatcacattatatacgtaaaatgaatccagcatcagacagcagccatg 729
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 528
Length of database: 929
Length adjustment: 10
Effective length of query: 518
Effective length of database: 919
Effective search space: 476042
Effective search space used: 476042
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
