Query= MSMg01no490_h08.b1 MSMg01no490_h08.b1 CHROMAT_FILE:
MSMg01no490_h08.b1 PHD_FILE: MSMg01no490_h08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:14:03 2005
(660 letters)
>mm_chr1_164764252_164765305
Length = 1054
Score = 866 bits (448), Expect = 0.0
Identities = 509/538 (94%), Gaps = 18/538 (3%)
Strand = Plus / Minus
Query: 1 cacatgttcaactcataccaaagcaactcaggaaagtatttctctctgctgagaaaaaag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533 cacatgttcaactcataccaaagcaactcaggaaagtatttctctctgctgagaaaaaag 474
Query: 61 gcacactataaacagatgatgctgtttgttcctttggaacacaatgatgatttccttttg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 gcacactataaacagatgatgctgtttgttcctttggaacacaatgatgatttccttttg 414
Query: 121 taattattctctaggaaaggttactagcgggtcaaaccttcttgccagatgtgggcttcc 180
||||||||||||||||| || ||||||||||||||| ||||||||||||||||||||
Sbjct: 413 taattattctctaggaaggggaactagcgggtcaaac---cttgccagatgtgggcttcc 357
Query: 181 cagtctgggctttatagtccttcagcagtctgctgtccgtagaaggactgcagtagctga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 cagtctgggctttatagtccttcagcagtctgctgtccgtagaaggactgcagtagctga 297
Query: 241 aggctgaaaattaagagaaagagaagctgccatgggctctagttgtgcctcagctctttt 300
||||||||||| ||||||||||||||||||| | ||||||||||||||||| ||||||||
Sbjct: 296 aggctgaaaatcaagagaaagagaagctgccgtaggctctagttgtgcctcggctctttt 237
Query: 301 tgttgttgttgtttgg------gttttttgggt------tttttttttttttgagatggt 348
|||||||||||||||| ||||||| || |||||||||||||||||||||
Sbjct: 236 tgttgttgttgtttggttttttgtttttt--gttttttgtttttttttttttgagatggt 179
Query: 349 caaactactttaactagcgcattcctgtagatgtcactagaccttaagacacttctaata 408
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 178 caaactactttaattagcgcattcctgtagatgtcactagaccttaagacacttctaata 119
Query: 409 ttttccttctccattcatctgaattttgctaacagtgttcaatgt-gatcagtaccaacc 467
|||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||
Sbjct: 118 ttttccttctccattcatctgaattttgctaacaatgttcaatgtatatcagtaccaacc 59
Query: 468 agatactgacataacccagtttaaaatcaatactcatgatatttttgccttagaacaa 525
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 58 agatactgacataacccagtttaaaatcaatactcatgatatttttgctttagaacaa 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 660
Length of database: 1054
Length adjustment: 10
Effective length of query: 650
Effective length of database: 1044
Effective search space: 678600
Effective search space used: 678600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no490_h08.g1 MSMg01no490_h08.g1 CHROMAT_FILE:
MSMg01no490_h08.g1 PHD_FILE: MSMg01no490_h08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:14:03 2005
(339 letters)
>mm_chr1_164571946_164572680
Length = 735
Score = 617 bits (319), Expect = 0.0
Identities = 333/339 (98%), Gaps = 4/339 (1%)
Strand = Plus / Plus
Query: 1 tggaataaaatccatttccaggccccaggcttggaagtcagcagtattctgagggtctgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tggaataaaatccatttccaggccccaggcttggaagtcagcagtattctgagggtctgg 260
Query: 61 aactcaagcggcaggaactgaggtatgaagacctgaggtataggtctcagtagacaaagg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aactcaagcggcaggaactgaggtatgaagacctgaggtataggtctcagtagacaaagg 320
Query: 121 cagggtcgagaagacaggcttcttcctacccaccacacagttcaaactgtcagcgccact 180
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 321 cagggtcgagaagacaggcttcttcctacccaccacacagttcaaaccgtcagcgccact 380
Query: 181 ttagcatggaattgttatatagaaaaataacctcctcagaatcaatcactcatgtggatt 240
||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 381 tta-catggaattgttatatagaaaaa---cctcctcagaatcaatcactcatgtggatt 436
Query: 241 tcagcacgaacacctacacaaatgtaaacagaagtactattcaccctaaagacaatgcaa 300
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 tcagcacgagcacctacacaaatgtaaacagaagtactattcaccctaaagacaatgcaa 496
Query: 301 cagcagttccctcggagactgaggagttagacccagaca 339
|||||||||||||||||||||||||||||||||||||||
Sbjct: 497 cagcagttccctcggagactgaggagttagacccagaca 535
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 339
Length of database: 735
Length adjustment: 9
Effective length of query: 330
Effective length of database: 726
Effective search space: 239580
Effective search space used: 239580
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
