BAC Information

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BAC

Clone NameMSMg01-490J07
Chromosome1 (Build37)
Map Location 196,570,963 - 196,571,637
singlet/doubletsinglet
Overlap genePlxna2
Upstream geneLOC667208, EG623172
Downstream geneCd34, Cd46, Crry, Cr2, EG635956, LOC623380
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-490J07.T7 (MSMg01no490_j07.b1)MSMg01-490J07.TJ (MSMg01no490_j07.g1)
ACCAG568782AG568783
length752748
length of high quality
(start - end)
675 (78 - 752)605 (79 - 683)
definitionCHROMAT_FILE: MSMg01no490_j07.b1 PHD_FILE: MSMg01no490_j07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:14:12 2005CHROMAT_FILE: MSMg01no490_j07.g1 PHD_FILE: MSMg01no490_j07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:14:12 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GCGGGACTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGAAT
CCGCGGAATTCACTATGTTTCACAAGCTAGGTAACTTATATATAATACTC
CTATCTCAGCTCCCACTCAAAACTCAAGTGCTAGAATTCCAGACATGTGC
CAGCATGCTCAGCTGGATATATTCTCATCTTTGAAGACTTGCCCTTAACC
TCTGTCTCCATATTTTTGACAGATTAGCCTGAATGTCCTTCATCTGAGCT
CCCACAGCACTTAGTGCTCACACCAATACTGAGCAACACACAGAGCAAAT
CTCAGTTAGGGAACTGTGGACTCCTGTGAACTGTTGGACTTTGTACTGGC
TGATTCTGTGCCATTTGTTGTGGATTCTCTATAGCTGAACATCAAGGCTG
CCACAGAACTGGCATTCAATCAGTTTCCCCCGAGTTTACCATGTTAGATC
CATGCTAATCCTCTGGAAAGGATTTTGTGAACATGCTCCCCTTAGATCTG
TATTTTCCTGCCAGTAGCAGAATGTTGTCACTGGGCTGGCTGCAGGTCAC
ATTTTCACCTGGGCTCACACTTCTAGTAGGTGACAGTCCTTTATGGCCTA
GCAAATGAATTTGTATTTCCAACCCAGCATGCATGTTTGCAACTCAGAAG
CCTCTTACCCAGCCAGCAACAGACACCTAAGATATGTCAAATGGAAAACT
CCAACCCTCTAGCCCTTTTGCTTGGCCTTTATTGTCACATGTGCTGGGCA
GG
NCCCCGATGAAGTGAGAGGTCTGGCGGCCGCCTGGATCCAAAATGGGGGT
GACACTATAGAATTTTCCGAAAAAGGGCTGATCTTTCCAAGACTTTTTCA
TGAAGGGGTGTTGGATTTTGTCAAATGTTTTTTTCATCATCTAATTAGAT
GATCATATGTTTTTTTTTCCTTTGAGTTTGTTTATATAATGAATTGCATT
GATGGATTTCCATATGTTGAACCATCCCTGCATCCCTGGGATGAAGCCTA
ATTGATCATAATGGATGATTGTTTTGATGTGTTCTTGGATTCGGTTTTCA
AGAATTGTATTGAGTATTTTTTTTTTTATATTCATAAGGGAAATTGGTCT
GAAGATCTCTTTCTTTGTTGGGTCTTTGTGTGTGTTAGGTATCAGAGTAA
TTGTGGCTCCATAGAATGCACCCGCCAGAGTACCTTATGTTTCTATTTTG
TGGAATAGTTTGAGGAGTATTGGTATTAGATCTTCATACTTTTTAAATTA
ACAACAACAAAAAAAAAGTTCTTGGGGATGGAGAGACAGTTTATCAGTTC
AGCACTTGTAGCTTTTGTGGAGGACCCAATTTCGTTCCCAGAATCCACAT
GGTTGCATACAACCATCTTTAACTACAGTTCCAGGTGTGCTGATGTTTTC
TTCTGACTTCATGAACAAGGTACACATGCATTAATCAGTCAAAACCTACA
TATAAAATATTTTAGAAATTAAGTTTTTACATTTTCCTTAAATATACN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no490_j07.b1 MSMg01no490_j07.b1 CHROMAT_FILE:
MSMg01no490_j07.b1 PHD_FILE: MSMg01no490_j07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:14:12 2005
         (675 letters)



>mm_chr1_196570763_196571837
          Length = 1075

 Score = 1274 bits (659), Expect = 0.0
 Identities = 671/675 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   taggtaacttatatataatactcctatctcagctcccactcaaaactcaagtgctagaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 taggtaacttatatataatactcctatctcagctcccactcaaaactcaagtgctagaat 260

                                                                       
Query: 61  tccagacatgtgccagcatgctcagctggatatattctcatctttgaagacttgccctta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tccagacatgtgccagcatgctcagctggatatattctcatctttgaagacttgccctta 320

                                                                       
Query: 121 acctctgtctccatatttttgacagattagcctgaatgtccttcatctgagctcccacag 180
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 321 acctctgtctccatatttttgacagattagcctgaatgcccttcatctgagctcccacag 380

                                                                       
Query: 181 cacttagtgctcacaccaatactgagcaacacacagagcaaatctcagttagggaactgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cacttagtgctcacaccaatactgagcaacacacagagcaaatctcagttagggaactgt 440

                                                                       
Query: 241 ggactcctgtgaactgttggactttgtactggctgattctgtgccatttgttgtggattc 300
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggactcctgtgaactgttgggctttgtactggctgattctgtgccatttgttgtggattc 500

                                                                       
Query: 301 tctatagctgaacatcaaggctgccacagaactggcattcaatcagtttcccccgagttt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 501 tctatagctgaacatcaaggctgccacagaactggcattcaatcagtttcccctgagttt 560

                                                                       
Query: 361 accatgttagatccatgctaatcctctggaaaggattttgtgaacatgctccccttagat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 accatgttagatccatgctaatcctctggaaaggattttgtgaacatgctccccttagat 620

                                                                       
Query: 421 ctgtattttcctgccagtagcagaatgttgtcactgggctggctgcaggtcacattttca 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctgtattttcctgccagtagcagaatgttgtcactgggctggctgcaggtcacattttca 680

                                                                       
Query: 481 cctgggctcacacttctagtaggtgacagtcctttatggcctagcaaatgaatttgtatt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 cctgggctcacacttctagtaggtgacagtcctttatggcctagcaaatgaatttgtatt 740

                                                                       
Query: 541 tccaacccagcatgcatgtttgcaactcagaagcctcttacccagccagcaacagacacc 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tccaacccagcatgcatgtttgcaactcagaagcctcttacccagccagcaacagacacc 800

                                                                       
Query: 601 taagatatgtcaaatggaaaactccaaccctctagcccttttgcttggcctttattgtca 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 801 taagatatgtcaaatggaaaactccaaccctctagcccttttgcttggcctttgttgtca 860

                          
Query: 661 catgtgctgggcagg 675
           |||||||||||||||
Sbjct: 861 catgtgctgggcagg 875


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 675
Length of database: 1075
Length adjustment: 10
Effective length of query: 665
Effective length of database: 1065
Effective search space:   708225
Effective search space used:   708225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)