NNNCCCCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXCTTCAAGATGATG
CGCGGAATTCAGCCTATCTCGAAACAAGGCGCAGAATCTCAAGAAGATGG
AGCTACAACGGCTCGTGATATGTATGAAGGCACCAGTCTGCATTATTCTG
TTACAGTTTTGAAATGCTAACCATTATACTTAATCTGACAGGTCCTAGGG
TTCAGCGCAGGCATTGGGTTTCTAACCATGAATAAAGTAGAGCTTTTGAA
AATATCTTTGCTTAAGCTTTTTAGGAGTTTACTCTTAGTCATGCATTCAA
TTGCCGATGACTTTTAAAAACTGTTATGTCCCAGATGTCTTGAAGAAAAT
AATAGTTTGAGATTCACTGCTGCTTGAGAGGGTGAAAAAAAAACGAGGAA
CCTCAGGAGTATCAGCTATGGAAGTAGACCTGGTGCTGCCTACCTAGAGC
CTTTACCTCTATGGACTAATAATGTTCATGGTACTGGAGGACATTTTAAT
GAAGAACCTAGCCATAAATTCCTCGATCTACCATAATGGCCAGTCTTCAA
GACATACTGCTGTAATAGTGGCACAATGCTTGTGGGGGTAACCAATTCCT
ATCTGATTAGACTTAAGGCATACTCCCTCCATGGAATGGATCCCATATTC
AACACTGTTTAGATGGCTATGAATATGAGACTAGATAGAACATGGTCTAA
GGGGAAAACCAGATGCTATGTTCTGATGAAGTAACATAGCCAT

ACTATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXTGACGAAAAAGTCGCCTAAATTAATACTCTTGAAGAG
CATTTCTACCATAGCCTCTGGAAGTTTCTTTCAAATGACAACATTCTAAA
ATTGTGTCTCCTTGTGTAGTTTTCATTTTTAACTCTGTCCAAAAATGAAC
CACTAAATACCTATCATTTGCCATGTGGTAAACAGAGAGAGAAGTAAGAG
TTTTTAATTTTATTTTAATCGAATATTGTTTAGAGAAACCAATGCAGTAC
CACACAGTATCATCACTATTGTATCTAATCATCATCTCAGGTATTAGGTT
ACTTTGCTGTAATGAAACGCTATGGCCAAAGAAAGCTGGGGAGGAAAGGG
GCAGCTTAGGTTTCTACATCATAGTTCATTATCAAAGGAAGTTAGGACTG
GAACTCCCAGAAGGGCTGGGACCTGGAGGCAGGAGCTGATGCAGAGGCCA
TGAGGAGAAATGCTTACTGGCTGGCTCCTCATGAATTTCTCAGCCTGAAT
TTCTATAGAACCCTGGACTTCCAGCCAGGGACAGTCCCAGCAACAATGGC
TGGGCCCTCCCCCATTGATTCTTGAGAAATTGCTCTATGGGCTTGCCTGC
AGCGCTACTTATGGAGCATTTTCTTAATTGAGGTTCCGTCTTCTCAGATG
ACTTTAGCCTACATCAAGTTGACATAAAGCTACTCATCACTGTTAGACTT
TTTTCTTCATAC

Query= MSMg01no490_j14.g1 MSMg01no490_j14.g1 CHROMAT_FILE:
MSMg01no490_j14.g1 PHD_FILE: MSMg01no490_j14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:14:14 2005
         (684 letters)



>mm_chr1_41679443_41680526
          Length = 1084

 Score =  797 bits (412), Expect = 0.0
 Identities = 436/444 (98%), Gaps = 2/444 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctaaattaatactcttgaagagcatttctaccatagcctctggaagtttctttcaaatga 60
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 ctaaattattactcttgaagagcatttctaccatagcctctggaagtttctttcaaatga 384

                                                                       
Query: 61  caacattctaaaattgtgtctccttgtgtagttttcatttttaactctgtccaaaaatga 120
           ||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||
Sbjct: 383 caacattctaaaattgtgtctccttgtgtagttctcatttttaactctgttcaaaaatga 324

                                                                       
Query: 121 accactaaatacctatcatttgccatgtggtaaacagagagagaagtaagagtttttaat 180
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 accactcaatacctatcatttgccatgtggtaaacagagagagaagtaagagtttttaat 264

                                                                       
Query: 181 tttattttaatcgaatattgtttagagaaaccaatgcagtaccacacagtatcatcacta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 tttattttaatcgaatattgtttagagaaaccaatgcagtaccacacagtatcatcacta 204

                                                                       
Query: 241 ttgtatct-aatcatcatctcaggtattaggttactttgctgtaatgaaacgctatggcc 299
           ||| | || ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 ttg-agctcaatcagcatctcaggtattaggttactttgctgtaatgaaacgctatggcc 145

                                                                       
Query: 300 aaagaaagctggggaggaaaggggcagcttaggtttctacatcatagttcattatcaaag 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144 aaagaaagctggggaggaaaggggcagcttaggtttctacatcatagttcattatcaaag 85

                                                                       
Query: 360 gaagttaggactggaactcccagaagggctgggacctggaggcaggagctgatgcagagg 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84  gaagttaggactggaactcccagaagggctgggacctggaggcaggagctgatgcagagg 25

                                   
Query: 420 ccatgaggagaaatgcttactggc 443
           ||||||||||||||||||||||||
Sbjct: 24  ccatgaggagaaatgcttactggc 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 684
Length of database: 1084
Length adjustment: 10
Effective length of query: 674
Effective length of database: 1074
Effective search space:   723876
Effective search space used:   723876
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)