NGATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCATAAAGGGGCN
GGAATCAGAGGTTTTCCAAGAACGGGAGGTCATGAGGAGGTCAGCACAAA
GGAGAGAATTTTTCCACCCAGCCTTGAAGAATGCACAAGATTCTGACCAA
TGGGAAAAGGCTAGACTATCCAGGTACACAACACAGCAACAAGTCAAGGA
TTTGGACCAGGAAACAGCATTGTTTAGTCCATGGAAATGGCATGACCTGG
TATTTAAATACCAGTTTCCTAGCATTAGCTTCTGCAGCCACTAGCCTGAG
CCCCCTCATACTATACTCAACTGATTCCTTTCTACCACCTCACAGTTCTC
ATCTATGGACCAGGACGTTCAGCCTGGAAAGACAGGGGAAGGGGATGCTA
TCTCATAGCCAGCTGGCCCGCATCAGAATCCTTGTCCATGATAGCTTCAG
ATGCTATGTCCCTGACTTACTCATCTGACTAGAACTGAAGGGCCTCATTA
GGAAAAAGAGGACTCTGACTAGACAGAAGATTAGAGAGATGGCTCAGAAG
GCAGAAGTTAACGGCACTTGCTACTCTTACAGGGAACCCAGGTTCAGTTC
CTAGCAGGTTCAGTTCCTAGTATCTACATGGTGCTAACAACCATTTGTAA
CTCCATTTCAGGGAAACCCAGCATCCGCTTCTGGCCTCTGTGAGCAATGT
ATGCATGTGGTGCATAGATACACACATGAATATTCCACAAATAACCAGAA
GGCAGGATAAG

ACGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTGAGCAGGCCATGTCCTCACCTGA
ACTCCGTTATCCTTGTTGGCAGTTAGGATAGGGAGTTGGGTAACCTAAGC
CGCCTCCTGCTGCCATTATTGTCACAGGGGACTCTTCACCCATTGTGTGA
GAGCTGTTTTCAACAGTCTGCAGACAATTGGTTGGTTCACAGGGAACTGG
GTTTTAAAGAAACAATGAACCATTTCAATTGCATTTCTACAAAAATGGGA
CAGTGCTGTTTGCCTCTTCTAAGACAGATGTGCAGTGGCACCACAACTCA
CAGTTGAGTATAAGCTGAATAGTGTTTGACTTTATCCTAGGAGAAGGTTG
TTCCTAAGCCAACCATGGCTATCTAACTTAAAAAAACAAACAAAAAAAAA
AAACAAAAAACCTAGCTCTGGAGTCAGACAGATCCCTTTATGTGGCCTCA
ATAAGGCTGCACCTTTCAGAGTCTTCATCCCTTGTTCCACTAAATAAGGC
ATATGACACAAACCCTTTCCCAGCGACTTGTTATATATAAACTGTTGCAT
ATAAACATTTAGCCAATGCCTGCACATAGCAAGGTCTCAATAAACATTAG
CAACTATGATAGTTCTGCATCACATTATATGTGTAACAGTCCAGAGTATT
CCAAATTTAGTATGACCCTCCCCACAGGGAGACCTGCTTGATTCCTTCTC
ATGTTTGGACTGAGTTAT

Query= MSMg01no490_o20.g1 MSMg01no490_o20.g1 CHROMAT_FILE:
MSMg01no490_o20.g1 PHD_FILE: MSMg01no490_o20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:14:40 2005
         (618 letters)



>mm_chr1_78566983_78568000
          Length = 1018

 Score = 1143 bits (591), Expect = 0.0
 Identities = 612/619 (98%), Gaps = 2/619 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgagcaggccatgtcctcacctgaactccgttatccttgttggcagttaggatagggagt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgagcaggccatgtcctcacctgaactccgttatccttgttggcagttaggatagggagt 260

                                                                       
Query: 61  tgggtaacctaagccgcctcctgctgccattattgtcacaggggactcttcacccattgt 120
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgggtaacctaagctgcctcctgctgccattattgtcacaggggactcttcacccattgt 320

                                                                       
Query: 121 gtgagagctgttttcaacagtctgcagacaattggttggttcacagggaactgggtttta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtgagagctgttttcaacagtctgcagacaattggttggttcacagggaactgggtttta 380

                                                                       
Query: 181 aagaaacaatgaaccatttcaattgcatttctacaaaaatgggacagtgctgtttgcctc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aagaaacaatgaaccatttcaattgcatttctacaaaaatgggacagtgctgtttgcctc 440

                                                                       
Query: 241 ttctaagacagatgtgcagtggcaccacaactcacagttgagtataagctgaatagtgtt 300
           |||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 441 ttctaagacagacgtgcagtggcatcacaactcacagttgagtataagctgaatagtgtt 500

                                                                       
Query: 301 tgactttatcctaggagaaggttgttcctaagccaaccatggctatctaacttaaaaaaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgactttatcctaggagaaggttgttcctaagccaaccatggctatctaacttaaaaaaa 560

                                                                       
Query: 361 caaacaaaaaaaaaaaacaaaaaa-cctagctctggagtcagacagatccctttatgtgg 419
           |||| |||| |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 561 caaa-aaaacaaaaaaacaaaaaaacctagctctggagtcagacagatccctttatgtgg 619

                                                                       
Query: 420 cctcaataaggctgcacctttcagagtcttcatcccttgttccactaaataaggcatatg 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 cctcaataaggctgcacctttcagagtcttcatcccttgttccactaaataaggcatatg 679

                                                                       
Query: 480 acacaaaccctttcccagcgacttgttatatataaactgttgcatataaacatttagcca 539
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 680 acacaaaccctttcccagcgacttgttatatatgaactgttgcatataaacatttagcca 739

                                                                       
Query: 540 atgcctgcacatagcaaggtctcaataaacattagcaactatgatagttctgcatcacat 599
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 atgcctgcacatagcaaggtctcaataaacattagcaactatgatagttctgcatcacat 799

                              
Query: 600 tatatgtgtaacagtccag 618
           |||||||||||||||||||
Sbjct: 800 tatatgtgtaacagtccag 818


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 618
Length of database: 1018
Length adjustment: 10
Effective length of query: 608
Effective length of database: 1008
Effective search space:   612864
Effective search space used:   612864
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)