BAC Information

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BAC

Clone NameMSMg01-490P11
Chromosome1 (Build37)
Map Location 88,144,314 - 88,144,624
singlet/doubletsinglet
Overlap geneArmc9
Upstream geneLOC100040213, LOC100039794, EG665338, Sp110, Sp140, Sp100, A630001G21Rik, Cab39, Itm2c, 4933407L21Rik, Gpr55, Spata3, 2810459M11Rik, Psmd1, Htr2b
Downstream geneB3gnt7, EG383538, Ncl, Snord82, Nmur1, 1700019O17Rik, LOC100040414, Ptma, Pde6d, Cops7b, Nppc, 4930429A22Rik, EG620213, LOC208256, Akp5, Alpi, Akp3, Ecel1, 1700027L20Rik, Chrnd, Chrng, Eif4e2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-490P11.T7 (MSMg01no490_p11.b1)MSMg01-490P11.TJ (MSMg01no490_p11.g1)
ACCAG569072AG569073
length752742
length of high quality
(start - end)
241 (373 - 613)311 (322 - 632)
definitionCHROMAT_FILE: MSMg01no490_p11.b1 PHD_FILE: MSMg01no490_p11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:14:43 2005CHROMAT_FILE: MSMg01no490_p11.g1 PHD_FILE: MSMg01no490_p11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:14:43 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NAACCAATAATTTGCGGTCGCNAAAAGANNCNAATTCGTTAGCGGGGGGN
NGGAANNCNGATTTTCCCCACGGAGGGGNNNGCCCCANNACNGAGAACCA
GACAAACCANAGGGNGGCCTCCCCCCAAGNACGGGNAGACAACNAGACAA
AGAGACNNAGGGAAGGGAGCTNCGGGACCACCNNNGACGGCNNCAGGCAC
ACAGNAGGGACCCAAGAAAGAANCANNNNANGAAGGNGCAAAACTCTCTT
TTATGCTGGAGCATAATTATAAAGAGTTGGGAACAAGGTATTTTAAAAGA
GGGAATTGGGGTTTTATTTTTTTGTCAGGGCNGGGCAGNAAAANATCTTG
ACAACAACTCTCTTTGGGCCCATTACTATGTAGTGGATGGATGGAGAAAT
AAAGAGAAAATACAAGCCCCACAGGCTATTTGAATTTAACTTCATGTTAA
ATAGCATGTAAAAGTCATTTGTATCAACTCCAGTGTGCAGTAATAGCCAC
ATGTGCCTTAGGGCAACTGCATTTGAACAGGGCAGGAAAACAGTTCGCAG
AATGTTCTTTTGGACAAAACTGGTAGGACGTATGTTCCTGCTTCTGACCT
GGATTTTAGACAAATAGCCATAGATGCATATACATGTACACATTCTTTCT
TTTATAGACCAACACCAGAGCACGCCAGCATCCCATGTCCACTTCTAGAT
CAGGGGCTCTCAACCTTCCTAACGCTGCAAGCCATTAATACAGGGCCTCT
AG
NNCTCATTGAAGTGGGAGTGCTNGGGGCTGCCGGATACAAGAGGGGGGGN
GAACTANAGAATACCTAAAAAGGGCTCTTTCTTCACCAGAATTATGGGCA
AGCAGCATGCTAAATGTGACTGACCACTGATATTCTCTTGTAAGCTTGAA
AGAGTAACTTACTCTCCTCTTCAGCATTTGCCATGACCTGCCTCTTGGGT
ACAGAGGTACTGTGTGCTCTGATACACAGCTCTCTGGGGGCAAAGGGGCA
GCATTGTGGCTTAGCAGAGCAGATACCCAGGGACAACGCCCTTCCAGGAC
TTTCCTGATGGCTTTTTTTTTAACGAGCCATGCCACGAGTTCCTGTACCA
TGGTGGCAGTTACTCTATTTTCCCCTTGTGCCAAGATGAACCATATTTCC
TGTACCGTAAGCCAACATAAACCTTTCCTCCCTTTAGCTGTGTTTGTCAG
CTACTTGGTCGTAGTAAAAGTCACTAATACAGCTAGTTTTCCTCATTCGG
CACAGGCAGTTATGAGACGTGACATTAAGTTCTTTTATGCACCATGATTT
TGAAAGGCAAACCCCATCAGGCTGGTAATTTCAGGTCACAGATCTGGGTG
ACAAAGGGCAACTTAGAGGGACGTTTTGAATGGTGGAAGTACTAGCAATG
CATGTGTGGCTCTGCTCCACACTGAGCTGTGTGTGTGATTTAATAAAATA
AAGATGTTTCTATGAGGAGATGCTGAACTGTGCTGAGGCTCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no490_p11.g1 MSMg01no490_p11.g1 CHROMAT_FILE:
MSMg01no490_p11.g1 PHD_FILE: MSMg01no490_p11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:14:43 2005
         (311 letters)



>mm_chr1_88143956_88144666
          Length = 711

 Score =  594 bits (307), Expect = e-174
 Identities = 310/311 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aacgagccatgccacgagttcctgtaccatggtggcagttactctattttccccttgtgc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 669 aacgagccatgccacgagttcctgtaccatggtggcagttactctattttccccttgtgc 610

                                                                       
Query: 61  caagatgaaccatatttcctgtaccgtaagccaacataaacctttcctccctttagctgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609 caagatgaaccatatttcctgtaccgtaagccaacataaacctttcctccctttagctgt 550

                                                                       
Query: 121 gtttgtcagctacttggtcgtagtaaaagtcactaatacagctagttttcctcattcggc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 gtttgtcagctacttggtcgtagtaaaagtcactaatacagctagttttcctcattcggc 490

                                                                       
Query: 181 acaggcagttatgagacgtgacattaagttcttttatgcaccatgattttgaaaggcaaa 240
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 acaggcagttatgagacatgacattaagttcttttatgcaccatgattttgaaaggcaaa 430

                                                                       
Query: 241 ccccatcaggctggtaatttcaggtcacagatctgggtgacaaagggcaacttagaggga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 ccccatcaggctggtaatttcaggtcacagatctgggtgacaaagggcaacttagaggga 370

                      
Query: 301 cgttttgaatg 311
           |||||||||||
Sbjct: 369 cgttttgaatg 359


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 311
Length of database: 711
Length adjustment: 9
Effective length of query: 302
Effective length of database: 702
Effective search space:   212004
Effective search space used:   212004
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)