BAC Information

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BAC

Clone NameMSMg01-491A19
Chromosome1 (Build37)
Map Location 173,485,838 - 173,486,402
singlet/doubletsinglet
Overlap genenone
Upstream geneNos1ap, LOC100040002, LOC640532, Olfml2b, Atf6, Dusp12, Fcrlb, Fcrla, LOC100040778, Fcgr2b, Fcgr4, Fcgr3, 1700009P17Rik, Sdhc, Mpz, Pcp4l1, Nr1i3, Tomm40l, Apoa2, Fcer1g, Ndufs2, Adamts4, B4galt3, Ppox, Usp21, Ufc1, EG622236, Dedd, Nit1, Pfdn2, 1190002J23Rik, Pvrl4, Arhgap30, Usf1, EG226654, F11r, Refbp2, Itlna
Downstream geneCd244, Ly9, Slamf7, Cd48, LOC100041098, Slamf1, Cd84, Slamf6, Vangl2, LOC100040199, Nhlh1, Ncstn, Copa, Pex19, LOC100041219, Wdr42a, Pea15a, Casq1, Timm23p, Atp1a2, Igsf8, Kcnj9, Kcnj10, Pigm, LOC665819, Slamf9, LOC100040274, Igsf9, Tagln2, Ccdc19, EG240916
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-491A19.T7 (MSMg01no491_a19.b1)MSMg01-491A19.TJ (MSMg01no491_a19.g1)
ACCAG569135AG569136
length751770
length of high quality
(start - end)		690 (59 - 748)565 (65 - 629)
definitionCHROMAT_FILE: MSMg01no491_a19.b1 PHD_FILE: MSMg01no491_a19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:14:50 2005CHROMAT_FILE: MSMg01no491_a19.g1 PHD_FILE: MSMg01no491_a19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:14:50 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAAAGC
CCATTCCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACAT
CAAAATAAATGGTGAGAAGCTGGAAGCAATCCCACTAAAATCAGGGACTA
GACAAGGCTGCCTACTTTCTTCCTACCTATTCAACATTGTACTTGAATTC
CTAGCCAGAGCAATTCGACAACAAAAGGAGATCAAGGGGATACATATTGG
AAAAGAAGAAGTCAAAATATTACTTTTTGCAGATGATATGATAGTATATA
TAAGTGACCCTAATATTCCACCAGAGAGCTCCTAAACCTGATAAACAGCT
TCAATGAAGTAGCTGGATATAAAATTAATTCGAACAAGTCAATGGCCTTT
CTCTATACAAATGATAAACAGGCTAAGAAAGAGAAACAACATCCTTCTCA
ATAGCCACAAATAATATAAAATACCTTGGTGTGACTCTAACTAAGGAAGT
GAAAGATTTGTATGATAAGAACTTCAAATCTCTGAAGAAAGAAATTAAAG
AAGCTCTCAGAAGATGGAAAGATCTCCCGTGCTCATGGATTGGCAGGATC
AATATAGTAAAAATGGCTATCTTGCCAAAATCAATCTACAGATTCAATGC
AATCCCCATCAAAATTCCAACTCAATTCTTCAATGAATTAGAAAGGGCAA
TTTGCAAATTTATCTGGAATAACAAAAAACCTAGGATAGCAAAAACTCTT
C

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXCTTAGGACCAACTGAGTCTCTGAAGTAGCCAAGGCA
CAAGAGGTAGGGCTTGAGGAACCTTTGATCTCTTGCTGGCGGCTCATTTT
CAAAGCCCTGGATAAGGCTCTATCTCAGATTTCAGAGACCTGGGGAATCT
CTGTCTGTCTATCTCTCTGTATGTATATCTATCCATCCACCCATCTATCC
ATCCATCCATCCATTGACCCATGCTGAAACATAGAGTTAGAGCAGCCTCA
GAGCTTACATGAATTTTGTCCGGTCTTGGATCCTTATCATAAAGTGGCTA
GATCTTAGAAACTTCCCATCCTAGAACTTGGCAGAGCAGGTATAACTGTC
ACCAGGGAAGAGACTAGGATGGAGTCGCTCACCACTGTGTCTCCGTGGGA
ATGAGAATGCCTTCTTTAGGGAACTCATTCATCTCTTCTGCACCAAGCAA
TGTTGAACCACCTGGAAAAAGCAGGCTCCAAAACGTTTAGCTAAGGAGAA
CATTTATGTTGAAGACTCAGGGCTGGACAGGGCAGTGTATAGAAAGAAAT
AGCAATTCTATGTATGTGATAGGACTTGTCAGGACCATAGGATAGAAGGA
TACATATGGCGCTTCCTCCAGATCAGTTTCCAGGAGGTGGTGGGTCATCT
ATGTTTGGAAGGAAAGATGGAGCTGGTCTTGGGATCAGGATTAGTGAAGC
AAATTTTCCTTTCTGGAGAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no491_a19.g1 MSMg01no491_a19.g1 CHROMAT_FILE:
MSMg01no491_a19.g1 PHD_FILE: MSMg01no491_a19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:14:50 2005
         (565 letters)



>mm_chr1_173485638_173486602
          Length = 965

 Score = 1093 bits (565), Expect = 0.0
 Identities = 565/565 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   cttaggaccaactgagtctctgaagtagccaaggcacaagaggtagggcttgaggaacct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cttaggaccaactgagtctctgaagtagccaaggcacaagaggtagggcttgaggaacct 260

                                                                       
Query: 61  ttgatctcttgctggcggctcattttcaaagccctggataaggctctatctcagatttca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttgatctcttgctggcggctcattttcaaagccctggataaggctctatctcagatttca 320

                                                                       
Query: 121 gagacctggggaatctctgtctgtctatctctctgtatgtatatctatccatccacccat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gagacctggggaatctctgtctgtctatctctctgtatgtatatctatccatccacccat 380

                                                                       
Query: 181 ctatccatccatccatccattgacccatgctgaaacatagagttagagcagcctcagagc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctatccatccatccatccattgacccatgctgaaacatagagttagagcagcctcagagc 440

                                                                       
Query: 241 ttacatgaattttgtccggtcttggatccttatcataaagtggctagatcttagaaactt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttacatgaattttgtccggtcttggatccttatcataaagtggctagatcttagaaactt 500

                                                                       
Query: 301 cccatcctagaacttggcagagcaggtataactgtcaccagggaagagactaggatggag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cccatcctagaacttggcagagcaggtataactgtcaccagggaagagactaggatggag 560

                                                                       
Query: 361 tcgctcaccactgtgtctccgtgggaatgagaatgccttctttagggaactcattcatct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tcgctcaccactgtgtctccgtgggaatgagaatgccttctttagggaactcattcatct 620

                                                                       
Query: 421 cttctgcaccaagcaatgttgaaccacctggaaaaagcaggctccaaaacgtttagctaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cttctgcaccaagcaatgttgaaccacctggaaaaagcaggctccaaaacgtttagctaa 680

                                                                       
Query: 481 ggagaacatttatgttgaagactcagggctggacagggcagtgtatagaaagaaatagca 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ggagaacatttatgttgaagactcagggctggacagggcagtgtatagaaagaaatagca 740

                                    
Query: 541 attctatgtatgtgataggacttgt 565
           |||||||||||||||||||||||||
Sbjct: 741 attctatgtatgtgataggacttgt 765


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 565
Length of database: 965
Length adjustment: 10
Effective length of query: 555
Effective length of database: 955
Effective search space:   530025
Effective search space used:   530025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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