BAC Information

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BAC

Clone NameMSMg01-491B03
Chromosome1 (Build37)
Map Location 63,781,486 - 63,945,164
singlet/doubletdoublet
Overlap geneFastkd2, 4933402D24Rik
Upstream geneNrp2, LOC100043070, A430093A21Rik, Ndufs1, Eef1b2, Gpr1, 1700039I01Rik, 4930431J08Rik, LOC667644, LOC100042638, Adam23, Gm215, Mdh1b
Downstream geneLOC671842, OTTMUSG00000013918, Klf7, Ppia-ps1_583.1, LOC100043124, Creb1, 2310038H17Rik, Ccnyl1, Fzd5, 9430067K14Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-491B03.T7 (MSMg01no491_b03.b1)MSMg01-491B03.TJ (MSMg01no491_b03.g1)
ACCAG569151AG569152
length738743
length of high quality
(start - end)		636 (62 - 697)638 (54 - 691)
definitionCHROMAT_FILE: MSMg01no491_b03.b1 PHD_FILE: MSMg01no491_b03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:14:51 2005CHROMAT_FILE: MSMg01no491_b03.g1 PHD_FILE: MSMg01no491_b03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:14:51 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(63,944,854 - 63,945,164)(63,781,486 - 63,782,117)
sequence
CGGCCGCTAAACGACTCCTATAGGTCGNAAATCCGCGGAATTCATACATA
GGTTCCCTAACTCTGCATCCCCAGGTCCTGGGTAGACTATCAGACTCTAT
CCTGAGATTTAACATTTGTGTGTCCATTCTTGCATGTATACCTGGGCTTG
TGCATGTTTGTGCAGGCACACCTGCATGAATGCAGTGATCAAAGGACAAC
CTCGGCTGACATTCCTCAAATGCCATATACCTTGTGTTTTTGAGACAGAG
TTTTTCATTGTCCTGGGATTTGCCAAGTAGGTTAGACTGGCTGACCACTG
AGTCCCCAGGTATCCTCCTCTCTCTGCCTTCTAACACTGGGATTACAAGC
ATATACCACCACACCTTCATTATATATACAAAACTATGTATATGTGTAAT
ATATGATATATGATAATATATCATATATGGTATATAGTATGTAGTATATG
GTATATGATATATAATACAAAATATAGGATACAGGATACTTAACATATAA
CGTAACATAAATGTGATATATGATACATGATATAATGTATAATGTCATAT
ATAATAGCTCATATATAATACATTATATATGATATAACATATAATAATAT
ATATATTTTATCACTATACTCACTATTCTCTCAGGCTGGAGCCCTTCTGC
TTTATATCTTGGGTTTTTTTTCTTTTCTTTTCTTTTTTTTTGGGGGGGGG
ACTGGGGAAAGAACCCAGGCTCTACCACTAAATGACTN

GGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXTTTTCGGAATTCTTGTTTTTGGGAGGCACCAGTAAGGTACACATTGG
TAGTAGTTAATACTTTGTTAAACTTAAAATTCTAATTCTGAATGATATAA
AGCTGAGGATAATACTTTTTCCAATTTATAAAACGTTGTGGGTGCTTTTG
AAATTAGTCTTTCTTAGACTCTAGTACTGATGTAAGGTCGGGAGAACTGA
CGTGCATACTCAGTTGAGAAGAGTTTCTTGGGTACTATGGGGATTGCTTT
ACACTGGCTTATTTTAAGAAGATATAAAATTGATACAACTAATGTCATGT
CACAGGTTAGTGAGAGTTATGAGGATACATTTAATCTAATGTGATTTGTT
CATTAGTAAAGACAGTACAATAATGTCAGTGAAAAGTATACTAGAATGAT
TTAGACCCTTCTTAGGTGCTTACACCATCTTGGGCAAGTAGACCATGTCT
GTGGTTTTCATATTCTTGGCCTATTCTAAGTAGATGCTGTACATAATGAA
GTTGTCAGATTTCTGGTATGGAGAGTCTAGGATTGTCCTATTTCTTGTGT
CTAATAACAGAATCCTAGTTGATCAGCAAGTTTGGAACATAAAACATGTC
TTCACCTTACAAACAGTGATGAAATGTATTGGGAAAGACGCACCATCTGC
ACTTAAGAAGAAATTGGAGGTAACACCTGACTTTTCTCTGGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no491_b03.b1 MSMg01no491_b03.b1 CHROMAT_FILE:
MSMg01no491_b03.b1 PHD_FILE: MSMg01no491_b03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:14:51 2005
         (636 letters)



>mm_chr1_63944854_63945889
          Length = 1036

 Score =  594 bits (307), Expect = e-174
 Identities = 310/311 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctgcatccccaggtcctgggtagactatcagactctatcctgagatttaacatttgtgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 tctgcatccccaggtcctgggtagactatcagactctatcctgagatttaacatttgtgt 252

                                                                       
Query: 61  gtccattcttgcatgtatacctgggcttgtgcatgtttgtgcaggcacacctgcatgaat 120
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 251 gtccattcttgcatgtatacctgggcttgtgcatgtttgtgcagtcacacctgcatgaat 192

                                                                       
Query: 121 gcagtgatcaaaggacaacctcggctgacattcctcaaatgccatataccttgtgttttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 191 gcagtgatcaaaggacaacctcggctgacattcctcaaatgccatataccttgtgttttt 132

                                                                       
Query: 181 gagacagagtttttcattgtcctgggatttgccaagtaggttagactggctgaccactga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131 gagacagagtttttcattgtcctgggatttgccaagtaggttagactggctgaccactga 72

                                                                       
Query: 241 gtccccaggtatcctcctctctctgccttctaacactgggattacaagcatataccacca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71  gtccccaggtatcctcctctctctgccttctaacactgggattacaagcatataccacca 12

                      
Query: 301 caccttcatta 311
           |||||||||||
Sbjct: 11  caccttcatta 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 636
Length of database: 1036
Length adjustment: 10
Effective length of query: 626
Effective length of database: 1026
Effective search space:   642276
Effective search space used:   642276
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no491_b03.g1 MSMg01no491_b03.g1 CHROMAT_FILE:
MSMg01no491_b03.g1 PHD_FILE: MSMg01no491_b03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:14:51 2005
         (638 letters)



>mm_chr1_63781280_63782317
          Length = 1038

 Score = 1183 bits (612), Expect = 0.0
 Identities = 627/632 (99%)
 Strand = Plus / Plus

                                                                       
Query: 7   gaattcttgtttttgggaggcaccagtaaggtacacattggtagtagttaatactttgtt 66
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 gaattcttgtttttgggaggcaccagtaaggtacacattggtagtagttaatactttgtt 266

                                                                       
Query: 67  aaacttaaaattctaattctgaatgatataaagctgaggataatactttttccaatttat 126
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 aaacttaaaattctaattatgaatgatataaagctgaggataatactttttccaatttat 326

                                                                       
Query: 127 aaaacgttgtgggtgcttttgaaattagtctttcttagactctagtactgatgtaaggtc 186
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 aaaacgttgtgggtgcttttgaaattagtctttcttagactctagtactgatgtaaggtc 386

                                                                       
Query: 187 gggagaactgacgtgcatactcagttgagaagagtttcttgggtactatggggattgctt 246
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 387 gggagaactgacgtgcatactcagttgagaagagtttcttgggtactatggggattgcat 446

                                                                       
Query: 247 tacactggcttattttaagaagatataaaattgatacaactaatgtcatgtcacaggtta 306
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 tacactggcttattttaagaagatataaaattgatacaactaatgtcatgtcacaggtta 506

                                                                       
Query: 307 gtgagagttatgaggatacatttaatctaatgtgatttgttcattagtaaagacagtaca 366
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 gtgagagttatgaggatacatttaatctaatgtgatttgttcattagtaaagacagtaca 566

                                                                       
Query: 367 ataatgtcagtgaaaagtatactagaatgatttagacccttcttaggtgcttacaccatc 426
           ||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 567 ataatgtaagtgaaaagtatactagaatgatttagatccttcttaggtgcttacaccatc 626

                                                                       
Query: 427 ttgggcaagtagaccatgtctgtggttttcatattcttggcctattctaagtagatgctg 486
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 ttgggcaagtagaccatgtctgtggttttcatattcttggcctattctaagtagatgctg 686

                                                                       
Query: 487 tacataatgaagttgtcagatttctggtatggagagtctaggattgtcctatttcttgtg 546
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 687 tacctaatgaagttgtcagatttctggtatggagagtctaggattgtcctatttcttgtg 746

                                                                       
Query: 547 tctaataacagaatcctagttgatcagcaagtttggaacataaaacatgtcttcacctta 606
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 747 tctaataacagaatcctagttgatcagcaagtttggaacataaaacatgtcttcacctta 806

                                           
Query: 607 caaacagtgatgaaatgtattgggaaagacgc 638
           ||||||||||||||||||||||||||||||||
Sbjct: 807 caaacagtgatgaaatgtattgggaaagacgc 838


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 638
Length of database: 1038
Length adjustment: 10
Effective length of query: 628
Effective length of database: 1028
Effective search space:   645584
Effective search space used:   645584
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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