BAC Information

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BAC

Clone NameMSMg01-491C09
Chromosome1 (Build37)
Map Location 181,056,429 - 181,057,053
singlet/doubletsinglet
Overlap geneSmyd3
Upstream geneLOC666262, 5830417C01Rik, LOC666284, 4930527J03Rik, LOC666295, B230369F24Rik, LOC669454, 2310005N03Rik, Hnrpu, Efcab2, D230039L06Rik, Kif26b
Downstream geneLOC666354, LOC433941, Tfb2m, LOC100040874, 9630058J23Rik, Sccpdh, Gm1305, Ahctf1, LOC100040914, LOC100042190, Cdc42bpa
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-491C09.T7 (MSMg01no491_c09.b1)MSMg01-491C09.TJ (MSMg01no491_c09.g1)
ACCAG569211AG569212
length755769
length of high quality
(start - end)
299 (317 - 615)619 (62 - 680)
definitionCHROMAT_FILE: MSMg01no491_c09.b1 PHD_FILE: MSMg01no491_c09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:14:58 2005CHROMAT_FILE: MSMg01no491_c09.g1 PHD_FILE: MSMg01no491_c09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:14:58 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATGCGCGGAATTCGGCACCA
ATTCTTATTAGACGCGTTCTCACGCCCGGCCAGGAAAGATGCAACAGACC
AGAATCTTCTGCGGCAAAACTTTATTGCTTACATCTTTGGGAGCCAGGAG
AGCAAGCGCCCAGCGCCCAGCCCCAAAAACGAAAGCCCCTCAATAATTTT
AGGAGCCAGAGCTCCGGCGCGCCAAAGCGCAGAGCGTGCTCTATTGTTTA
CATCTTTAGGCAGCGAGCGAGCGCAGGGCGCGCAGAGCCAGAGAGATGCC
AGCGAGCGCTATTTTTGGAAAACCCCGTCCCCTTTAAGGAGGAGTGACCC
TTCACTTAGGACGCATCACTCCCTGATTGGCTGCAGCCCATGGCCGAGCT
GACGTTCACGGGAAAAGCAGAGTACAAGTAGTCATAAAATACCCTTGGCT
CATGCGCAGATTATTTGTTTACCACTTAGAACACAGGATGTCAACGCCAT
CTTGTGACGGCGAATGTGGGGGCGGCTCCCAACATTTGAGTACATTCCTT
TACACGGCGTTTAAGAAGTGGTTGTTTTAGACCACCCCTCCTTCCTCATT
ATAGTCCACTGGTATCTTCACTTTTACCAGGTGGAATCACAGAGAGCGAT
GTCCCTTCTCTCTACCTTTATCCCCAACCCCAAATCTAAGTATCCAGCTA
TTGCACCACAGACTTCTAGAACCACCTCAGCCAGTGTCTGGCTTCCTTCA
CTATC
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXCCTGACCATGGCTAAGGAAACACCCCATGGAAGCAGTAG
TTGTTCGGGAGAAAGCAAAAAGAAAAAAAAACAAAAGGAGATAAATAGTA
TCAAATTCTCTCTTTGTGCAGAAAGTTCTATTTGATCATTTTCAAAGTTA
AAGGTCCAGTCCTTCTTTGAATCTAACCATAAACTTTATGGGTGCTAGGA
CTTGGTTCCCTTACAGGCGCCAGAGGCTTTAAACTCCTTTTCCTTTAAAC
TCCTGTGTTGTCCACTCTACTTGGTTATGGCAGAGTGGGTTGGCTTTTGT
CTTTAAGATGGAGATTCTTTTTTTTTAAATGTTTTCACTCCGTACCTTGT
TTATAAATGTTTGGCTTTTGCCAGATGTTTTGGGTTGAGCTGAGTGGGGG
AGCCTTCAGGGTGAGCTGATTTCCAAGTGTTTATTCTACAGCATTTCTAA
TGTAAATGTGTGGCGTGGAAAGACTGTGAGTGCTTTTGCTGCATTAGGTC
TGTCCTGACAGCTCCGTGTTTCTGAATTCTTATAATGATTCTATCTGGCT
GGCTGTCCAGCCTGGTTTTCACGAAGAGCTCCCAGATAATTAGCCAAAGG
ACACCCACACATAACACCTCATGGTTTGAAAAAGCAGAGCTTTGGGACAC
TGGTACAGCTCATGGGGTCCTTGCCTTCAGCCTGCTGCAGGCTCTCCCAT
CGTTGAATATTTGCACCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no491_c09.g1 MSMg01no491_c09.g1 CHROMAT_FILE:
MSMg01no491_c09.g1 PHD_FILE: MSMg01no491_c09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:14:58 2005
         (619 letters)



>mm_chr1_181056229_181057253
          Length = 1025

 Score = 1098 bits (568), Expect = 0.0
 Identities = 609/626 (97%), Gaps = 8/626 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   cctgaccatggctaaggaaacaccccatggaagcagtagttgttcgggagaaagcaaaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 825 cctgaccatggctaaggaaacaccccatggaagcagtagttgttcgggagaaagcaaaaa 766

                                                                       
Query: 61  gaaaaaaaaacaaaaggagataaatagtatcaaattctctctttgtgcagaaagttctat 120
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 765 g-aaaaaaaacaaaaggagataaatagtatcaaattctctctttgtgcagaaagttctat 707

                                                                       
Query: 121 ttgatcattttcaaagttaaaggtccagtccttctttgaatctaaccataaactttatgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 706 ttgatcattttcaaagttaaaggtccagtccttctttgaatctaaccataaactttatgg 647

                                                                       
Query: 181 gtgctaggacttgg------ttcccttacaggcgccagaggctttaaactccttttcctt 234
           ||||||||||||||      ||||| ||||||||||||||||||||||||||||||||||
Sbjct: 646 gtgctaggacttggatgtgcttcccgtacaggcgccagaggctttaaactccttttcctt 587

                                                                       
Query: 235 taaactcctgtgttgtccactctacttggttatggcagagtgggttggcttttgtcttta 294
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 586 taaactcctgtgttgtccactctacttggttatggcagagtgggttggcttttgtcttta 527

                                                                       
Query: 295 agatggagattc-tttttttttaaatgttttcactccgtaccttgtttataaatgtttgg 353
           |||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 526 agatggagattctttttttttttaatgttttcactccgtaccttgtttataaatgtttgg 467

                                                                       
Query: 354 cttttgccagatgttttgggttgagctgagtgggggagccttcagggtgagctgatttcc 413
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 466 cttttgccagatgttttgggttgagctgagtgggggagccttcagggtgagccgatttcc 407

                                                                       
Query: 414 aagtgtttattctacagcatttctaatgtaaatgtgtggcgtggaaagactgtgagtgct 473
           |||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||
Sbjct: 406 aagtgtttattctacagcatttctaatgtaaatgtgtggcatggaaagactttgagtgct 347

                                                                       
Query: 474 tttgctgcattaggtctgtcctgacagctccgtgtttctgaattcttataatgattctat 533
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 346 tttgctgcattaggtctgtcctgacagctccatgtttctgaattcttataatgattctat 287

                                                                       
Query: 534 ctggctggctgtccagcctggttttcacgaagagctcccagataattagccaaaggacac 593
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 286 ctggctggctgtccagcctggttttcacgaagagctcccagatagttagccaaaggacac 227

                                     
Query: 594 ccacacataacacctcatggtttgaa 619
            |||||| ||||||||||||||||||
Sbjct: 226 tcacacaaaacacctcatggtttgaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 41
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 619
Length of database: 1025
Length adjustment: 10
Effective length of query: 609
Effective length of database: 1015
Effective search space:   618135
Effective search space used:   618135
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)