Query= MSMg01no491_f10.b1 MSMg01no491_f10.b1 CHROMAT_FILE:
MSMg01no491_f10.b1 PHD_FILE: MSMg01no491_f10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:15:13 2005
(605 letters)
>mm_chr1_137946541_137947545
Length = 1005
Score = 1154 bits (597), Expect = 0.0
Identities = 603/605 (99%)
Strand = Plus / Plus
Query: 1 tcacttgactattgaggagtgaaccctagatttgagctcagaccaacagttctccaaatc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcacttgactattgaggagtgaaccctagatttgagctcagaccaacagttctccaaatc 260
Query: 61 cccgccctctttcctcttgattgtttctggagataggagtaccacaaaggcctttcctta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cccgccctctttcctcttgattgtttctggagataggagtaccacaaaggcctttcctta 320
Query: 121 gtgatatgttcacttttctctacttttagcaaagttctgggaactcttctgctgagctga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtgatatgttcacttttctctacttttagcaaagttctgggaactcttctgctgagctga 380
Query: 181 cgggctctccgcctctgcccacatcccccgcagatccgggatcctgcaaaaagatccagt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cgggctctccgcctctgcccacatcccccgcagatccgggatcctgcaaaaagatccagt 440
Query: 241 gaggaacaagaattgtgcgctgggggaatctggtcatggaggctcgcagctagagccagg 300
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gaggaacaagaattgggcgctgggggaatctggtcatggaggctcgcagctagagccagg 500
Query: 301 ggcagtgctggcggccttggactgcaggaagaggcaagactctcagtccaggaggaccag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ggcagtgctggcggccttggactgcaggaagaggcaagactctcagtccaggaggaccag 560
Query: 361 gcagggaagagggagaaagtgctcagattgctcaacacatgtcaccgcaggcgcgaccac 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gcagggaagagggagaaagtgctcagattgctcaacacatgtcaccgcaggcgcgaccac 620
Query: 421 agcagatacctgctgtgcctctgctagccgctgcacttgtccagagctatgactcacatt 480
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 621 agcagatacctgctgtgcctctgctagctgctgcacttgtccagagctatgactcacatt 680
Query: 481 aaggagtccaagccaacccaaaaaggcaaaatgaagccttagcaactcgcagcaccccag 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aaggagtccaagccaacccaaaaaggcaaaatgaagccttagcaactcgcagcaccccag 740
Query: 541 agtgctagcaatgtgacttgtcccctttgtcaggaccacacagagcccgtgcagaggcct 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 agtgctagcaatgtgacttgtcccctttgtcaggaccacacagagcccgtgcagaggcct 800
Query: 601 ttcag 605
|||||
Sbjct: 801 ttcag 805
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 605
Length of database: 1005
Length adjustment: 10
Effective length of query: 595
Effective length of database: 995
Effective search space: 592025
Effective search space used: 592025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no491_f10.g1 MSMg01no491_f10.g1 CHROMAT_FILE:
MSMg01no491_f10.g1 PHD_FILE: MSMg01no491_f10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:15:13 2005
(544 letters)
>mm_chr1_138117868_138118813
Length = 946
Score = 978 bits (506), Expect = 0.0
Identities = 536/546 (98%), Gaps = 2/546 (0%)
Strand = Plus / Minus
Query: 1 ttcagcagcagcagcccttttgggagattgacaaaagtggatgggctaaggctgggtttc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 746 ttcagcagcagcagcccttttgggagattgacaaaagtggatgggctaaggctgggtttc 687
Query: 61 ccgttacacggagatgatagcatctaccttagctgttaagggattacatgaattagagta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 ccgttacacggagatgatagcatctaccttagctgttaagggattacatgaattagagta 627
Query: 121 tgcgacatatctaggaaagcactggcacagtagaaatattagccgttattaatggtttct 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 626 tgcgacatatctaggaaagcactggcacagtagaaatattagccgttattaatgttttct 567
Query: 181 tatcgtcaagcagttgaaaatgatttctgggttccatgtgggtcacagggactcagcctc 240
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 566 tatcgtcaagcagttgaaaatgatttctgggttccgtgtgggtcacagggactcagcctc 507
Query: 241 agactccaaagctctgtatctgttgaagggcaaaagtaacaaagccccccagtttccc-c 299
|||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 agactccagagcactgtatctgttgaagggcaaaagtaacaaagccccccagtttcccta 447
Query: 300 agtgacagctgcaactgtttcacatgaagctg-cctgtgctccatcttcctcaggcgact 358
||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 446 agtgatagctgcaactgtttcacatgaagctgccctgtgctccatcttcctcaggcgact 387
Query: 359 tgcagagcacttgtggacacaactcatctcagggccagctggccagaccccaacctaagt 418
|||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||
Sbjct: 386 tgcagagcacttgtggacacgactaatctcagggccagctggccagaccccaacctaagt 327
Query: 419 tggtctcatgagtccccacagcccagctctctaccctgacttctcttgtgggtaccacag 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 tggtctcatgagtccccacagcccagctctctaccctgacttctcttgtgggtaccacag 267
Query: 479 gaattcttgcttttaagaccggggaattggtttgcatttgtgatgtttgaagatgataga 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 gaattcttgcttttaagaccggggaattggtttgcatttgtgatgtttgaagatgataga 207
Query: 539 cagaca 544
||||||
Sbjct: 206 cagaca 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 544
Length of database: 946
Length adjustment: 10
Effective length of query: 534
Effective length of database: 936
Effective search space: 499824
Effective search space used: 499824
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
