Query= MSMg01no491_f15.b1 MSMg01no491_f15.b1 CHROMAT_FILE:
MSMg01no491_f15.b1 PHD_FILE: MSMg01no491_f15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:15:14 2005
(714 letters)
>mm_chr1_170800293_170801406
Length = 1114
Score = 1359 bits (703), Expect = 0.0
Identities = 709/711 (99%), Gaps = 2/711 (0%)
Strand = Plus / Plus
Query: 5 gaattccatgactgatcc-atggctgactccagtaagcagaaatgtggatttcatctact 63
||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccatgactga-ccaatggctgactccagtaagcagaaatgtggatttcatctact 263
Query: 64 gtaccacagtgaggctgttgatggctctgtgcttgacagatgttctatacttgcctaagt 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gtaccacagtgaggctgttgatggctctgtgcttgacagatgttctatacttgcctaagt 323
Query: 124 tgacataatggactatatatatgtattgaagtgggcagatatcaacagtgaatgtgaaga 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tgacataatggactatatatatgtattgaagtgggcagatatcaacagtgaatgtgaaga 383
Query: 184 gattgatatcagtgggttatgttaacccagaatagcatagcaattgactttccatcataa 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gattgatatcagtgggttatgttaacccagaatagcatagcaattgactttccatcataa 443
Query: 244 ttattcctgcatttcgtggtatttaatagctcaatcaataacctcaatgaccatgttcat 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ttattcctgcatttcgtggtatttaatagctcaatcaataacctcaatgaccatgttcat 503
Query: 304 taggtgtacaagtaatatcatactagttagtgtaatgaatattaagactcagcataacta 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 taggtgtacaagtaatatcatactagttagtgtaatgaatattaagactcagcataacta 563
Query: 364 aggcaaacagtttttctggtctgggatagtaaatctgagaaaccatcttaaatagccctg 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 aggcaaacagtttttctggtctgggatagtaaatctgagaaaccatcttaaatagccctg 623
Query: 424 tgtataatcacaatacaagtatgtagtatccaacaacaaataagatcaaacaattttaag 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 tgtataatcacaatacaagtatgtagtatccaacaacaaataagatcaaacaattttaag 683
Query: 484 aataaacttaattaataagttatctgaaagatgtttcaacaaaatcctatggacagtaat 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 aataaacttaattaataagttatctgaaagatgtttcaacaaaatcctatggacagtaat 743
Query: 544 tactagtttctaggtgtcatgatgagtgtttgatgtgaattttcttaattattatttgct 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 tactagtttctaggtgtcatgatgagtgtttgatgtgaattttcttaattattatttgct 803
Query: 604 gaaactattgcaaaaggtgttatcattcacatttttgaatgagaatactgaagctggaaa 663
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 gaaactattgcaaaaggtgttatcattcacatttttgaatgagaatactgaagctggaaa 863
Query: 664 gaaagttaaattgaataagcataaataaagaactggctaggatgattctgt 714
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 864 gaaagttaaattgaataagcataaataaagaactggctaggatgattctgt 914
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 714
Length of database: 1114
Length adjustment: 10
Effective length of query: 704
Effective length of database: 1104
Effective search space: 777216
Effective search space used: 777216
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no491_f15.g1 MSMg01no491_f15.g1 CHROMAT_FILE:
MSMg01no491_f15.g1 PHD_FILE: MSMg01no491_f15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:15:14 2005
(666 letters)
>mm_chr1_170833449_170834514
Length = 1066
Score = 971 bits (502), Expect = 0.0
Identities = 502/502 (100%)
Strand = Plus / Minus
Query: 1 actgcctacgtagactgttttgtttggtttggtttctaggatgactattttcatagtgtt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 actgcctacgtagactgttttgtttggtttggtttctaggatgactattttcatagtgtt 443
Query: 61 agtctttttgtttttgtttgtttgtttgtttttctttaatattgagaatttcacatatgc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 agtctttttgtttttgtttgtttgtttgtttttctttaatattgagaatttcacatatgc 383
Query: 121 atataataaaatacaatatgtatacacccatctccttcttcaaactctccccaacacaaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 atataataaaatacaatatgtatacacccatctccttcttcaaactctccccaacacaaa 323
Query: 181 gcaactaatttccctttttgtctttttccaattttttattagatattttcttcatttaca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 gcaactaatttccctttttgtctttttccaattttttattagatattttcttcatttaca 263
Query: 241 tttcaaatgctatcccgaaagtcctctataccctccccaccccctgctccactacccacc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 tttcaaatgctatcccgaaagtcctctataccctccccaccccctgctccactacccacc 203
Query: 301 cactcccacttcttggccctggtgttcccctgtactgaggcatataaagtttgcaatacc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 cactcccacttcttggccctggtgttcccctgtactgaggcatataaagtttgcaatacc 143
Query: 361 aaggggcctctcttctcaatgatggctgactaggccatcttctgctacatatgcagctag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142 aaggggcctctcttctcaatgatggctgactaggccatcttctgctacatatgcagctag 83
Query: 421 agacacgagctctgggggtactagttagttcatattgttgttccacctatagggttgcag 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82 agacacgagctctgggggtactagttagttcatattgttgttccacctatagggttgcag 23
Query: 481 acctcttcagctccttaggtac 502
||||||||||||||||||||||
Sbjct: 22 acctcttcagctccttaggtac 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 666
Length of database: 1066
Length adjustment: 10
Effective length of query: 656
Effective length of database: 1056
Effective search space: 692736
Effective search space used: 692736
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
