BAC Information

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BAC

Clone NameMSMg01-491F17
Chromosome1 (Build37)
Map Location 136,366,184 - 136,366,834
singlet/doubletsinglet
Overlap geneKlhl12
Upstream geneLOC667371, Snrpe, Zc3h11a, LOC667118, Lax1, Atp2b4, Optc, Prelp, LOC100042352, LOC100042358, Fmod, Btg2, EG667414, Chit1, Chi3l1, Mybph, Adora1, Myog, Ppfia4, LOC100042382, Tmem183a, 4933406M09Rik, Cyb5r1, Adipor1
Downstream geneRabif, 4931440L10Rik, Jarid1b, LOC100042418, Syt2, Ppp1r12b, Ube2t, Lgr6, Ptprv, LOC100042432, Ptpn7, Arl8a, Gpr37l1, LOC100043064, Elf3, Rnpep, Timm17a, Lmod1, Tmem58, Ipo9, Nav1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-491F17.T7 (MSMg01no491_f17.b1)MSMg01-491F17.TJ (MSMg01no491_f17.g1)
ACCAG569370AG569371
length7451,618
length of high quality
(start - end)
655 (40 - 694)---
definitionCHROMAT_FILE: MSMg01no491_f17.b1 PHD_FILE: MSMg01no491_f17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:15:15 2005CHROMAT_FILE: MSMg01no491_f17.g1 PHD_FILE: MSMg01no491_f17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:15:15 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CGGCCGCTATACGACTCCTATAGGTCGAGGATCCGCGGAATTCACTCTGT
ATGTCCCGGCTGGCCTCGACCTCAGAAATCCACCTGCCTCTGCCTCCTGA
GTACTGGGATTAAAGGCGTGCACCAACACACTGGCTGAGTTTGGAATTGT
TAAGTCTTGGGCATGGTAGGCAAGTACTGTGTCACTGAACCACCCTGGAC
TCAGCTCTACAGTATCTGTTCTGTGGCATTGACCTCATTTGATCCTCACA
TCCTGCAGTTATCAGAAACTGTGGCTCAGAGGTAAACCCTCACACCATTG
TAGGTAGTAAGTAATATAGCCAGGATTCCGATCCAGGCAAGCAGCTAGAT
GCGATACCACACATCTGGATTCCAGCATACAGGAGCCAGAGCTATGAAGT
TCAAAGCCATCCTATAGAAGAAACCTTGACTCAAAAAACCAACAAAAAAA
GGTAAAGGAAAAATTTAAAAGCTGAGTATACTAGCTTATACCTGTATTTC
CATCACATAGGCAGTATATTCAGTTTAAAACCTTCCTCTGCTACATATTG
AGTACCAGACTAGCTTGGGCTGTATGAAACTCTTTCTCCAAACAACAACA
ACAAAAAGAAGAAGAAGAAGAAATACTCAGAAACAAATCAGGCCATGAAT
TCCCAAGGCTGTCCTGGAACTCACTTTGTAGACCAGGCTGGCCTCAGAAA
TCCACCTGCCTCTGCCTCCCAAGAGCTGGGATTAAGGCGTGTGCC
TGTGGGTGGGGTCTTCTGGTTNNGTGATTCTCCTGTTTCCGTGTCGNCTC
TGTCTCTCACCNCNAGATACGACAGGTGGCCGGGATGCGGCAGAGNGAGG
CAGAGCGGCGGCTTGTCTCCCCTCACGCGACAGACACCACACTNAGAGCG
TTGAAGTGGTCTCGTAGCGCAGCGCGCTGTCGTGTGGGTGACTATGGTCG
GAGTGATCGTGCGNCGGCATGCGTGCCGNCGNTNGCGCCGTGACGTGTAA
CTACCGCTCGCGATCACGAGTGATGTGTTGAAGATATGTTAATAGACATG
TCTAGTCATGCGCACAGTGCGAGAGACACAATAGGATTTGTCGTGTGGTA
GTATGTGAGTGTATCATACTGTGAGACGCTGCATGCGAACATGCATGACG
CGANGACCACCGACGANAGTACGCGCGTAACGCCTCACTCTGTCGCGCAC
GCAGCCCGCACTCTACTCACACCGACCGATCGCGCAGCCTCCTCGCCCGA
CGCTCCCTCTTCTCAACATACCATCATACGCGCCCGTGCATCCACACAAC
ATAGTCGATCATACTGCCCACCCACACCCCTCCGCCGCCTGCCTGCTCAC
CGCAGCCCACTCACCGCATACCGTCCACGACAACCACGACGTTGCGTTGA
GATGGAATGATAAATCAAAAGACGGCGGAATGGCAGAAATAACCGTGAGT
GGAACATGAGGTGCACCTAGCGTANGAAATGTCTGCGAGCGCCGGGAGCA
GGACTAGGGAGGAACTACTAGCNGACTACCGTGCCACCGCCACCGGAGCA
AGTCGCGACTGACATGACTGCGCAGACGAGCACGCAACGACGCATACCTC
CGCCAGTACGACTATAGCACANTGCGACTCTTATACTCAACGCTGATACA
ATCACGATCTATATACTCTTACACTCCCATTTCGTACGTTGACGTGACGA
ATTCTTACTGCAGCCACGCGCCTGCGCGTCAGCCTCCCTTCGGTAGTCAC
TCCTCGATCATCGCGTATGTTGACGTCCGCTCCACATGTATACTCGCTGT
GCGCCTCAATATAACCTTACCGTGAGGTGTCTCGATATGGCAGCCTCATG
TATGGTCTGGCCTNCTCTGCATCGTACATAATCACATATATATCACTCAG
AGTGGACGCGACGCTCATCATACTCACAATTGCACTGCATATCTANCCAA
CACTCATGTCACTGCTCTNCTGCATATATTTACAATAGATCGCACAGGAT
GAGATGAGACGCAGCACGTTGCAGTACGCCGTCGAGAACACGCGGCAATA
TCAACGAACGCTTGCTTCGATCATCCCACGACAGTCGATGAGACTGGAGT
CTGCTGTCTGNCTGATAGTCTGCACTGAGGCTAGAGGCCTCGTGTACAGC
AATACTATCTCGTNTGTANNGTTATAGCNATGATGACACACATCACATCG
CNCGTATGCGTACGTATATCGAGTGAGTGCATGTAGGACTNCGTATGACA
GTGAGNAGATAGATCGTGCACTAGCGCGCATATGATATATTATGTAGAGT
AGCCGCTAGAGACTACGTAGACAAGATACANCATCNTGACATACGCTACC
GCACGGTCTCTCATGCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no491_f17.b1 MSMg01no491_f17.b1 CHROMAT_FILE:
MSMg01no491_f17.b1 PHD_FILE: MSMg01no491_f17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:15:15 2005
         (655 letters)



>mm_chr1_136365983_136367037
          Length = 1055

 Score = 1220 bits (631), Expect = 0.0
 Identities = 648/655 (98%), Gaps = 4/655 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   attcactctgtatgtcccggctggcctcgacctcagaaatccacctgcctctgcctcctg 60
           |||||||||||| | || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 attcactctgta-gaccaggctggcctcgacctcagaaatccacctgcctctgcctcctg 260

                                                                       
Query: 61  agtactgggattaaaggcgtgcaccaacacactggctgagtttggaattgttaagtcttg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agtactgggattaaaggcgtgcaccaacacactggctgagtttggaattgttaagtcttg 320

                                                                       
Query: 121 ggcatggtaggcaagtactgtgtcactgaaccaccctggactcagctctacagtatctgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggcatggtaggcaagtactgtgtcactgaaccaccctggactcagctctacagtatctgt 380

                                                                       
Query: 181 tctgtggcattgacctcatttgatcctcacatcctgcagttatcagaaactgtggctcag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tctgtggcattgacctcatttgatcctcacatcctgcagttatcagaaactgtggctcag 440

                                                                       
Query: 241 aggtaaaccctcacaccattgtaggtagtaagtaatatagccaggattccgatccaggca 300
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 441 aggtaaaccctcacaccattgtaggtagtaagtaatagagccaggattccgatccaggca 500

                                                                       
Query: 301 agcagctagatgcgataccacacatctggattccagcatacaggagccagagctatgaag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agcagctagatgcgataccacacatctggattccagcatacaggagccagagctatgaag 560

                                                                       
Query: 361 ttcaaagccatcctatagaagaaaccttgactcaaaaaaccaacaaaaaaaggtaaagga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttcaaagccatcctatagaagaaaccttgactcaaaaaaccaacaaaaaaaggtaaagga 620

                                                                       
Query: 421 aaaatttaaaagctgagtatactagcttatacctgtatttccatcacataggcagtatat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aaaatttaaaagctgagtatactagcttatacctgtatttccatcacataggcagtatat 680

                                                                       
Query: 481 tcagtttaaaaccttcctctgctacatattgagtaccagactagcttgggctgtatgaaa 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tcagtttaaaaccttcctctgctacatattgagtaccagactagcttgggctgtatgaaa 740

                                                                       
Query: 541 ctctttctccaaacaacaacaacaaaaagaagaagaagaagaaatactcagaaacaaatc 600
           ||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||
Sbjct: 741 ctctttctccaaacaacaacaacaaaaagaagaagaagaa---atactcagaaacaaatc 797

                                                                  
Query: 601 aggccatgaattcccaaggctgtcctggaactcactttgtagaccaggctggcct 655
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 798 aggccatgaattcccaaggctgtcctggaactcactttgtagaccaggctggcct 852



 Score = 72.3 bits (37), Expect = 1e-16
 Identities = 48/53 (90%), Gaps = 4/53 (7%)
 Strand = Plus / Plus

                                                                
Query: 31  cctcagaaatccacctgcctctgcctcct--gagtactgggattaaaggcgtg 81
           ||||||||||||||||||||||||||||   |||  |||||||||||||||||
Sbjct: 850 cctcagaaatccacctgcctctgcctcccaagag--ctgggattaaaggcgtg 900


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 2
Length of query: 655
Length of database: 1055
Length adjustment: 10
Effective length of query: 645
Effective length of database: 1045
Effective search space:   674025
Effective search space used:   674025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)