Query= MSMg01no491_g21.b1 MSMg01no491_g21.b1 CHROMAT_FILE:
MSMg01no491_g21.b1 PHD_FILE: MSMg01no491_g21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:15:20 2005
(289 letters)
>mm_chr1_167856549_167857237
Length = 689
Score = 489 bits (253), Expect = e-143
Identities = 256/257 (99%)
Strand = Plus / Minus
Query: 5 gaattcagtataaggaacaatgtatttccaagttggaaagaaagtgttatggaagacatc 64
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 gaattcagtataaggaaaaatgtatttccaagttggaaagaaagtgttatggaagacatc 336
Query: 65 attagaggaggtagagtttatgctgcccattgaagaatgggttacagttaaacataatgg 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 attagaggaggtagagtttatgctgcccattgaagaatgggttacagttaaacataatgg 276
Query: 125 tggttggcattttaccctcagcatgaagaagcaataaaagctaagatgaagttaaagaaa 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 tggttggcattttaccctcagcatgaagaagcaataaaagctaagatgaagttaaagaaa 216
Query: 185 gatgtaccaagtctctctctctctctctctctctctctctctctctctctctctctctct 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 gatgtaccaagtctctctctctctctctctctctctctctctctctctctctctctctct 156
Query: 245 ctctctctctctctctc 261
|||||||||||||||||
Sbjct: 155 ctctctctctctctctc 139
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 126
Number of extensions: 48
Number of successful extensions: 48
Number of sequences better than 10.0: 1
Number of HSP's gapped: 46
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 689
Length adjustment: 9
Effective length of query: 280
Effective length of database: 680
Effective search space: 190400
Effective search space used: 190400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no491_g21.g1 MSMg01no491_g21.g1 CHROMAT_FILE:
MSMg01no491_g21.g1 PHD_FILE: MSMg01no491_g21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:15:21 2005
(603 letters)
>mm_chr1_167839784_167840786
Length = 1003
Score = 1154 bits (597), Expect = 0.0
Identities = 603/605 (99%), Gaps = 2/605 (0%)
Strand = Plus / Plus
Query: 1 ctctgctggtaatagaagagttcaagacggaataaagactagctaagacatccagctgca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 199 ctctgctggtaatagaagagttcaagacggaataaagactagctaagacatccagctgca 258
Query: 61 tgaactgaaagaccaccatcattggactagccagaccatagcctgtaaactactctaata 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 tgaactgaaagaccaccatcattggactagccagaccatagcctgtaaactactctaata 318
Query: 121 aatgctaataaattaatatgcattcattctataagttctgttcatttagctctgatctaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 aatgctaataaattaatatgcattcattctataagttctgttcatttagctctgatctaa 378
Query: 181 acaaagactaaatgttcctgaaaaattaagtgaggaaaaagggatttgaatatttgaccc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 acaaagactaaatgttcctgaaaaattaagtgaggaaaaagggatttgaatatttgaccc 438
Query: 241 atttttttt-attttgttttttattttgtttttgtttattttttcaagacagggtttctc 299
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 atttttttttattttgttttttattttgtttttgtttattttttcaagacagggtttctc 498
Query: 300 tgtgtagccctggctgccctggaactcactctgtagaccaggctggcctcaaactcagaa 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 tgtgtagccctggctgccctggaactcactctgtagaccaggctggcctcaaactcagaa 558
Query: 360 atccgcctgtctctgcctcccaagtgctgggattaaaggcgtgtgccacctggcttccat 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 atccgcctgtctctgcctcccaagtgctgggattaaaggcgtgtgccacctggcttccat 618
Query: 420 ttttttt-ctaaagtaaaaattgagtgatataacaaaatttccatcaataaaataaaaga 478
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 ttttttttctaaagtaaaaattgagtgatataacaaaatttccatcaataaaataaaaga 678
Query: 479 tttgattcctgaaatttgacaccagcttatccaattcaatttaggaattgatgttaagtt 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 tttgattcctgaaatttgacaccagcttatccaattcaatttaggaattgatgttaagtt 738
Query: 539 attttaaaaattcacataaaagtcagatataacaaaacaatacagctttatattggctct 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 attttaaaaattcacataaaagtcagatataacaaaacaatacagctttatattggctct 798
Query: 599 agtat 603
|||||
Sbjct: 799 agtat 803
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 603
Length of database: 1003
Length adjustment: 10
Effective length of query: 593
Effective length of database: 993
Effective search space: 588849
Effective search space used: 588849
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
