BAC Information

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BAC

Clone NameMSMg01-491K17
Chromosome1 (Build37)
Map Location 102,565,127 - 102,565,491
singlet/doubletsinglet
Overlap genenone
Upstream geneC230078M14Rik, LOC633295, EG666200
Downstream geneLOC100041909, LOC100040993, LOC383650
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-491K17.T7 (MSMg01no491_k17.b1)MSMg01-491K17.TJ (MSMg01no491_k17.g1)
ACCAG569609AG569610
length738744
length of high quality
(start - end)		671 (64 - 734)655 (66 - 720)
definitionCHROMAT_FILE: MSMg01no491_k17.b1 PHD_FILE: MSMg01no491_k17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:15:39 2005CHROMAT_FILE: MSMg01no491_k17.g1 PHD_FILE: MSMg01no491_k17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:15:39 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCGCGGAATTCTCAGT
TCTTTCTTAAATGTCTTTATAAAACTCCTCTCCAAGGAGACAGAGAGTAA
CAGATCTTGAGTTAAAGGCCCCCCTCATACAGAACAAGTTCCAAGTAGAG
ACAAGCTTAAGTCCAGACATGGGGGTATATGCCTTTGATCCTAGCATTCA
TGAGAGAGAGCCATGAAGATCTCTGACTTCAACATCCATCTACGGAGCAA
GTTCCACTACAGCCAAGCTTAGATAATGAAGGATTTGGAAAACAGAAAGC
TGGCGATAATATGATAGAACTAGTGTTCCATGTTCTAGCTACAGGGAGCA
TCAGAACTCAGGAGTTTGGGCCATGTGTCATTGGATTTAGAGTGAAACAA
TAAGAAGGGACTACTGGAACAATTGATCCTGGTTAGCTGTATCTAAAAAA
TTAACTATGATTAAGAAGAGATCAGCATCACTGACATGAAATATGGTAAG
TGTTTTCTGAGAGCCCAGAGAAGTATTCTTGAGATAGCTGAGGTTGTACC
TTGATGTGCAAGGAACACCTAGGTGGTACTGGCTTTGAATGTATGAAGGG
GTCATGGAGAGCAGCTGAGTATTTACCCTATGAGAAGCTAGGGAAGGTCA
TTGGTAAAGGTGCAGTTTCAGTTGCAGTTGACTACCCAGGACTGAAGGTG
TCTATTGCTTAAGTCTAGTTGCAGTTGAAGACTCCAGN

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXAGAGAAAGAGATCAAGGCAGGAAAATGAAGGCAGT
AGCAGGAGTAAAGTTCATGCAGGAATGCTTCTTATTTTCTTTATTCTTTT
AGCTTGCTCGGCCTGCTTTTATCTAGAAGCCAGGGCCAGCAGCCCAATAG
TGATACTATCCACAGTTAGCTGGCCCCTCCTAAATCAATCTTCAATCAAG
GACACACACCATAGGTTTGCCTAAAGACCAATATGGTAGGTGCATTTTCT
TAGGTGATGTTTCCTTTTCCAAAATGACTCTAGCCTGTTCAAGTAGACAT
GAAACAAACCAATATAACAAGTATAAGATATTACATTAATTTTCTTGGGT
AACAAGAATAAGCATCTATTCATTCTTCATAGGGCACTGATGAATGACCA
AAGTAACCATTTCATCAAAGTCCAATCTGGGAAACTAATGATTTTATGAG
CCTTAATTAAAGAACATGAGTAAAGGGCTACCTACAGTAGCAAAAGAGCT
TCAAAACTACAAAGTACCATCTTCATAGGAACTGCATCATAGAATCACAC
TCTCAACCTTACACTTCCTACATATACTATGCTTGGAGGAGAGAAATGAT
AACACAGGTTATCATATGATGTTTTCTTGCTGTGTGTATTACTTAGGGTT
CAAATCAGTGATTTCTGCCATCTCAAATTATCAGCATCTCAGTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no491_k17.g1 MSMg01no491_k17.g1 CHROMAT_FILE:
MSMg01no491_k17.g1 PHD_FILE: MSMg01no491_k17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:15:39 2005
         (655 letters)



>mm_chr1_102564437_102565491
          Length = 1055

 Score =  698 bits (361), Expect = 0.0
 Identities = 364/365 (99%)
 Strand = Plus / Minus

                                                                        
Query: 291  aaaccaatataacaagtataagatattacattaattttcttgggtaacaagaataagcat 350
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1055 aaaccaatataacaagtataagatattacattaattttcttgggtaacaagaataagcat 996

                                                                        
Query: 351  ctattcattcttcatagggcactgatgaatgaccaaagtaaccatttcatcaaagtccaa 410
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 995  ctattcattcttcatagggcactgatgaatgaccaaagtaaccatttcatcaaagtccaa 936

                                                                        
Query: 411  tctgggaaactaatgattttatgagccttaattaaagaacatgagtaaagggctacctac 470
             |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 935  cctgggaaactaatgattttatgagccttaattaaagaacatgagtaaagggctacctac 876

                                                                        
Query: 471  agtagcaaaagagcttcaaaactacaaagtaccatcttcataggaactgcatcatagaat 530
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 875  agtagcaaaagagcttcaaaactacaaagtaccatcttcataggaactgcatcatagaat 816

                                                                        
Query: 531  cacactctcaaccttacacttcctacatatactatgcttggaggagagaaatgataacac 590
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 815  cacactctcaaccttacacttcctacatatactatgcttggaggagagaaatgataacac 756

                                                                        
Query: 591  aggttatcatatgatgttttcttgctgtgtgtattacttagggttcaaatcagtgatttc 650
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 755  aggttatcatatgatgttttcttgctgtgtgtattacttagggttcaaatcagtgatttc 696

                 
Query: 651  tgcca 655
            |||||
Sbjct: 695  tgcca 691


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 655
Length of database: 1055
Length adjustment: 10
Effective length of query: 645
Effective length of database: 1045
Effective search space:   674025
Effective search space used:   674025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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