BAC Information

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BAC

Clone NameMSMg01-491L03
Chromosome1 (Build37)
Map Location 15,137,458 - 15,137,950
singlet/doubletsinglet
Overlap genenone
Upstream geneEya1, LOC665391, Msc, Smt3h2-ps4, EG665407, Trpa1, EG269105, LOC100039949
Downstream geneLOC100039959, Kcnb2, Ppia-ps1_109.1, Terf1, Gm106, LOC665434, 4930444P10Rik, Rpl7, Rdh10
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-491L03.T7 (MSMg01no491_l03.b1)MSMg01-491L03.TJ (MSMg01no491_l03.g1)
ACCAG569629AG569630
length723757
length of high quality
(start - end)
524 (69 - 592)494 (63 - 556)
definitionCHROMAT_FILE: MSMg01no491_l03.b1 PHD_FILE: MSMg01no491_l03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:15:41 2005CHROMAT_FILE: MSMg01no491_l03.g1 PHD_FILE: MSMg01no491_l03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:15:41 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAATCCGCGGAATTCAT
TGTTTTATCACGCTGAAAGTAGTCCATTGTGTAAATGTACCACATTTTCT
GTATCCATTCCTCTGTTGAGGGACATTTGGGTTCTTTCCAGCTTCTGGCT
ATTGTAAATATGTATGCTATGAACATAGTAGAGCATGTGTCCTTATTACC
AGTTGGAACGTCTTCTGGATATATGCCCAGGAGAGGTATTTCGGGATCCT
TCTGGTAGTACTATGTCCAATTTCTGAGGAACCGCCAGACTGATTTCTAG
AGTGGTTGTACCAGCTTGTTTTCCCACCAACAATGGAGGAGTGTCCCTCT
TTCTCCACATCCTCACCAGCATCTGCTGTCACCTAAATTTTTGATCTTAG
CTACTCTGACTGGTGTGAGGTGGAATCTCAGGGTTGTTTTGATTTGCATT
TCCATAATGACTAAGGATGTTGAACATTATTTCAGGTGCTTCTCAGCCAT
TCGGTATTCCTCAGTTGAGAATTCTTTATTTAGCACTATAATCCATTTTT
TAATAGGATTATTTGATTTTCTGGAGGCTATCTTCTTGAGTTTTTTATAT
ATATTGGATATTAGTTCCCTATCTGATTTAGGATTGGTAAAGATCCTTTC
CCAATCTGTTCATGGCCTTTTTTCTTATTGACAGTGTCTTTTGCCTTAAA
AAAACTTTGCAATTTTATAAGGG
GGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXAATTGTCTCCTTGCAATGTTCCTTGACATTGCTTTCTACT
TCTGCCCTTTCTGAGGTTCTCACAGGTCCTCGGGAAGAAATAGCCTTCCA
GTGGGATACTTTTTGCAAACGATTGCTCACAGAACATAAAGATTTTGCCT
AAGGAAAACAAAGACAGGTTGTGTTAAAGAAAAGAAATTGGAAAACCATG
AGGAAGACGACCTCTCTTTATCTGCACAGATACTCTGTGAATGCCAGAGA
AGCAGAGGAGAGGTCTGTGACTGCTGAAATCAGTGCATGGCATGCTGCTT
TATGGAAATGTCCAGAAAGTTAGCAATATTCCCAAAAGGAAAGGCTACAT
CAGCAGGACAGGCTACTGAGACACAAGGGTCCTCACTGCTGTCCCCAGAT
TAGGTAAAGCCTGGAGGCAGCTGAATATACCAGGCCAGAGAAGCTCTGTG
GACAGAGAGCTCATTTTGCATTAACCATCAGTGAGTGAGGGTGCTCATCT
TATTTTCTTGGTTCTTTATCTAGGTCCAGGCAGTGACATGACTCCACGGT
TGGTATTGAGAAAACCAGAAAGTGACTGGGTCAAACGTTATGCAGGCCAG
ATAGAGATTAATTTATTTATTAATAAAAAAAGGGAATACTCATTGTATGT
GTCAAGCACATGAGATTATATTTTATATTCAGCTTCTTATACTAACTATG
TTTGTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no491_l03.g1 MSMg01no491_l03.g1 CHROMAT_FILE:
MSMg01no491_l03.g1 PHD_FILE: MSMg01no491_l03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:15:41 2005
         (494 letters)



>mm_chr1_15137258_15138150
          Length = 893

 Score =  924 bits (478), Expect = 0.0
 Identities = 490/494 (99%), Gaps = 1/494 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttgtctccttgcaatgttccttgacattgctttctacttctgccctttctgaggttctca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 693 ttgtctccttgcaatgttccttgacattgctttctacttctgccctttctgaggttctca 634

                                                                       
Query: 61  caggtcctcgggaagaaatagccttccagtgggatactttttgcaaacgattgctcacag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 633 caggtcctcgggaagaaatagccttccagtgggatactttttgcaaacgattgctcacag 574

                                                                       
Query: 121 aacataaagattttgcctaaggaaaacaaagacaggttgtgttaaagaaaagaaattgga 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 573 aacataaagattttgcctaaggaaaacaaagacaggttgtgttaaagaaaaggaattgga 514

                                                                       
Query: 181 aaaccatgaggaagacgacctctctttatctgcacagatactctgtgaatgccagagaag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 aaaccatgaggaagacgacctctctttatctgcacagatactctgtgaatgccagagaag 454

                                                                       
Query: 241 cagaggagaggtctgtgactgctgaaatcagtgcatggcatgctgctttatggaaatgtc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 cagaggagaggtctgtgactgctgaaatcagtgcatggcatgctgctttatggaaatgtc 394

                                                                       
Query: 301 cagaaagttagcaatattcccaaaaggaaaggctacatcagcaggacaggctactgagac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 cagaaagttagcaatattcccaaaaggaaaggctacatcagcaggacaggctactgagac 334

                                                                       
Query: 361 acaagggtcctcactgctgtccccagattaggtaaagcctggaggcagctgaatatacca 420
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 acaagggtcctcactgctatccccagattaggtaaagcctggaggcagctgaatatacca 274

                                                                       
Query: 421 ggccagagaagctctgtggacagagagctcattttgcattaaccatcagtgagtgagggt 480
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 273 ggccagagaagctctgtggacagagagctca-tttgcattaaccatcagtgagtgagggt 215

                         
Query: 481 gctcatcttatttt 494
           || |||||||||||
Sbjct: 214 gcccatcttatttt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 494
Length of database: 893
Length adjustment: 10
Effective length of query: 484
Effective length of database: 883
Effective search space:   427372
Effective search space used:   427372
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)