BAC Information

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BAC

Clone NameMSMg01-491L09
Chromosome1 (Build37)
Map Location 115,388,891 - 115,389,133
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC666635
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-491L09.T7 (MSMg01no491_l09.b1)MSMg01-491L09.TJ (MSMg01no491_l09.g1)
ACCAG569641AG569642
length753760
length of high quality
(start - end)
586 (35 - 620)249 (67 - 315)
definitionCHROMAT_FILE: MSMg01no491_l09.b1 PHD_FILE: MSMg01no491_l09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:15:42 2005CHROMAT_FILE: MSMg01no491_l09.g1 PHD_FILE: MSMg01no491_l09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:15:42 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CGCTATACGACTCCTATAGTTTCAAGAACGTCGGATTCTCTGGTGGATTC
CTAAAAACACTTATATATACTATCATATCATCTGCAAAAAGTGATATTTT
GACTTCCTCTTTTCTAATTTGTATCCCCTTGATCTCCTTTTGTTGTCTAA
TTGCTCTGACTATTACTTCAAGTAGTATGTTGAAGAGGTAGGGTTGTCTA
GTCCCTGAGTTTGGTGGGATTGCTTCAAGATTCTCACCATTTACTCTGAT
TGTGGCTACTGGTTTGCTGTAGATTGCTTTTATCATATTTAGGTATGGTA
CTTGAATTCTTTTATCTTTCCAAGACTTTTATCATGAATGGGTGTTGGAT
CTTGTCAAATGATTTTTCTGCATCTAACGAGATGATCATGTGGTTTTTGT
CTTTGAGTTTGTTTATATAATGGATTACATTGATGGATTTTCGTATATTA
AACCATCCCTGAATCCCTGGAATAAAACCTACTTGGTCAGGATGGATGAT
TGCTTTAATATGTTCTTGGATTCGGTTAGCGAGAATTTTATTGAGGATTT
TTGCATCGATATTCATAATAGAAATTGGTCTGAAGTTCTCTATCTTTGTT
GGGTCTTTCTGTGGTTTAGGTATCAGAGTAATAGTGGCTTCATAAAATGA
GTTGGGTAGAGTACCTTCTACTTCTATTTTGTGAAATAATTTGTGCAGAA
CTGGAATTAGATCTTCTTTGAAGGTCTGATAGAACTCTGCACTAAACCCT
TCN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XTGCTAAAACATGCGTTTCTCCTTTATACGCCCCAGCATGGCACAGGCCA
TGTGTGGGGTGGGTGGAAACTTGCCACAGTATAGATTCTGAAAGAAAGGT
AGCCTCATCTATCTTGGTCCCCTCCTCCTACACACACACACACACACACA
CACACACACACACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA
GAGAGAGAGAGAGACAGACAGACAGACAGACAGAGAGAGAGAGACAGAGA
GAGAGAGAGAGAGAGTTTTTTAGAGAGGGAGGGAGAGAGAAAGAGGCTCA
GACTATGGGAACTTTAGGACAAATGTTCTACTATGTTCATATCAGCCTTA
TTTATAACAGCCAGAAGCTGAAAAGAACCCATATGTACCTCAACAGAGGA
ATGGATTCAGAAAATGTGGTATGTTTATTCAATGGAGTACTACTCAGCTA
TATAAAAACAATGACTTCATGAGATTCTTAGACAAATGGATGGAACTAGA
GGATATCCTCCTGCATGAGGTAACCCAGTCACAAAAGAAAACACATGTTA
TGTACTCAATGATAGGGAGATATTAGACAAAGAGCTCAAAATACCCACGA
TACAATTCACAGATCATATGGAGCTTGAGAAGAAAGAAGAACAAAGTGTG
GATATTTCAGTCTTTCTTAGATGGGAGAAATAAATCCTCCTAGGAAATAA
AGGGGGCGAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no491_l09.g1 MSMg01no491_l09.g1 CHROMAT_FILE:
MSMg01no491_l09.g1 PHD_FILE: MSMg01no491_l09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:15:42 2005
         (249 letters)



>mm_chr1_115388691_115389339
          Length = 649

 Score =  397 bits (205), Expect = e-115
 Identities = 236/249 (94%), Gaps = 6/249 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttctcctttatacgccccagcatggcacaggccatgtgtggggtgggtggaaacttgcca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttctcctttatacgccccagcatggcacaggccatgtgtggggtgggtggaaacttgcca 260

                                                                       
Query: 61  cagtatagattctgaaagaaaggtagcctcatctatcttggtcccctcctcctacacaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cagtatagattctgaaagaaaggtagcctcatctatcttggtcccctcctcctacacaca 320

                                                                       
Query: 121 cacacacacacacacacacacacacacagagagagagagagagagagagagagagagaga 180
           ||||||||||||||||||||||||||    ||||||||||||||||||||||||||||||
Sbjct: 321 cacacacacacacacacacacacaca----gagagagagagagagagagagagagagaga 376

                                                                       
Query: 181 gagagagagagagagagacagacagacagacagacagagagagagagacagagagagaga 240
           |||||||||||||| ||||||| ||| |||  |||||||||||||||| || ||| ||||
Sbjct: 377 gagagagagagagacagacagagagagaga--gacagagagagagagagagggagggaga 434

                    
Query: 241 gagagagag 249
           |||| ||||
Sbjct: 435 gagaaagag 443


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 129
Number of extensions: 20
Number of successful extensions: 20
Number of sequences better than 10.0: 1
Number of HSP's gapped: 13
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 649
Length adjustment: 9
Effective length of query: 240
Effective length of database: 640
Effective search space:   153600
Effective search space used:   153600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)