Query= MSMg01no491_l12.b1 MSMg01no491_l12.b1 CHROMAT_FILE:
MSMg01no491_l12.b1 PHD_FILE: MSMg01no491_l12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:15:43 2005
(625 letters)
>mm_chr1_121527735_121528759
Length = 1025
Score = 1112 bits (575), Expect = 0.0
Identities = 619/643 (96%), Gaps = 20/643 (3%)
Strand = Plus / Plus
Query: 1 ataaaaggtgagatgcttttgctgtcttaaaaaaatagtatcaaactattatctatacat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 ataaaaggtgagatgcttttgctgtcttaaaaaaatagtatcaaactattatctatacat 244
Query: 61 acatacagaaaaataaaatttaattcatctatttattaattttggttatctccatgatga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 acatacagaaaaataaaatttaattcatctatttattaattttggttatctccatgatga 304
Query: 121 ctccataattcagtaggcaccatacac--gttggactgcttgaattaaaatgtggtacat 178
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 305 ctccataattcagtaggcaccatacacatgttggactgcttgaattaaaatgtggtacat 364
Query: 179 taattttagatgccacatgattaagactaaactatattacattaatactttggatcctta 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 taattttagatgccacatgattaagactaaactatattacattaatactttggatcctta 424
Query: 239 tattttgctgcccactttaaattctggtatatcaataaagtatatatcacaaggtcatta 298
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 tattttgctgcccactttagattctggtatatcaataaagtatatatcacaaggtcatta 484
Query: 299 ggtaacttggcttatattatatgctttagcaaaaaaaaaaaaaaaaaaaaaaaaa---cc 355
|||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||
Sbjct: 485 ggtaacttggcttatattat--gctttagcaaaaaaaaaaaaaaaaaaaaaaaaaaaccc 542
Query: 356 ttaaaaacaaaaa----ac-aaaccaaaccaaaaaa--------actgcccttgatctat 402
||||||||||| || |||||||||||||||| ||||||||||||||||
Sbjct: 543 caaaaaacaaaaaccaaaccaaaccaaaccaaaaaaccaaaaaaactgcccttgatctat 602
Query: 403 caagcttattgtatatagtaataagatgaactgttcactcaatacccatttattttatcc 462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 603 caagcttattgtatatagtaataagatgaactgttcactcaatacccatttattttatcc 662
Query: 463 tgggactaaatgtggctatgcagcaagtaactgaaaggggttcttatacttaccatgcta 522
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 663 tgggactaaatgtggctatgcagcaagtaactgaaaggggttcttatacttactatgcta 722
Query: 523 taaaatcaaatgagttacaatttaagctttaaagtatttatctagagttaagcataattt 582
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 723 taaaatcaaatgagttacaatttaagctttaaagtatttatctagagttaagcataattt 782
Query: 583 ttctgttttttggaaaatctggatatatgtatatatgaagaga 625
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 783 ttctgttttttggaaaatctggatatatgtatatatgaagaga 825
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 49
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 625
Length of database: 1025
Length adjustment: 10
Effective length of query: 615
Effective length of database: 1015
Effective search space: 624225
Effective search space used: 624225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no491_l12.g1 MSMg01no491_l12.g1 CHROMAT_FILE:
MSMg01no491_l12.g1 PHD_FILE: MSMg01no491_l12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:15:43 2005
(644 letters)
>mm_chr1_121676480_121677521
Length = 1042
Score = 1201 bits (621), Expect = 0.0
Identities = 637/643 (99%), Gaps = 2/643 (0%)
Strand = Plus / Minus
Query: 2 ttaaaaatgcaaagaacatctaaatcttttgttttacagccaatacagaatcttatctca 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 842 ttaaaaatgcaaagaacatctaaatcttttgttttacagccaatacagaatcttatctca 783
Query: 62 ctgtctcttgagcatctttcttgcttacatacagataagctttgggtttttgaagtttgt 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 782 ctgtctcttgagcatctttcttgcttacatacagataagctttgggtttttgaagtttgt 723
Query: 122 aaccttaaacatttatcactttagcttttgctattatatacttggtttggttagatgatt 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 722 aaccttaaacatttatcactttagcttttgctattatatacttggtttggttagatgatt 663
Query: 182 tgttttgttcttttgtcttttgtttcttttctctttgtcttttgaacagggtgtcatcat 241
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 662 tgttttgttcttttgtcttttgttttttttctctttgtcttttgaacagggtgtcatcat 603
Query: 242 gtagaccaagcatcatgcttgcttagaacccttaatcttgtctcagtttctactgctggg 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 602 gtagaccaagcatcatgcttgcttagaacccttaatcttgtctcagtttctactgctggg 543
Query: 302 ttgtaggtgtgctctgccactaatttaatataatatacaataataatctgcactaaatat 361
||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||
Sbjct: 542 ttgtaggtgtgctctgccactgatttaatataatatacaataataatctgtactaaatat 483
Query: 362 attttattgaggaaaacaatgaattatataatatttattatgcataattttaaaagtagt 421
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 attttattgaggaaaac--tgaattatataatatttattatgcataattttaaaagtagt 425
Query: 422 taaggttcatttatcaccatgctgttaagtttatgattcttgtgcatttccctttttcgt 481
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 424 taaggttcatttatcaccatgttgttaagtttatgattcttgtgcatttccctttttcgt 365
Query: 482 ttctttttctgcattcagttagttacaatatctgtcagtaggacaaagattagattatag 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 ttctttttctgcattcagttagttacaatatctgtcagtaggacaaagattagattatag 305
Query: 542 ataactgttagcttgagcttccttcaggtttttagtttgcattatggacatactttgttg 601
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 ataactgttagcttgagcttccttcaggtttttagtttgcattatggacatactttgttg 245
Query: 602 gttcctctctttgtgattttcaaactttggattacatgaagat 644
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 gttcctctctttgtgattttcaaactttggattacatgaagat 202
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 644
Length of database: 1042
Length adjustment: 10
Effective length of query: 634
Effective length of database: 1032
Effective search space: 654288
Effective search space used: 654288
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
