XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAGTACCA
ATTTTGATTGCCATGAAATTAAGTACATTTTACTGAGCACCTTAAACCCA
AAAACTGAGAAATATACAGAGGACTTCCAGAGAGGCAGAACAAAAATTAA
TTTGTAGATAATGGGTGACTTATAATTAAGATTATATTAAATATGTATAT
GATGAGTAAAAATATGTATACAAATATTCATTAAAATATGTATTCTGTAT
ATATGCAAAATGGAATTTTAATTGAGCATTAAAGAAAAATTAAATTGTGG
CATTTGTAGGAAAATGGGATAGAATTAGAGATCATTAGGTATAGCAAGAC
AGGCCTGGTTCCTTTCATATGTAGAATCTTAATTTAAATATATATGCATG
CATATATACATATACATGTTCATTTCATATTTATATACATGAAGAACATT
CTTTCTTTCTTTCTTTTCTTTTTTTTTTTTTTTTTGGCTTTTTTGAGACA
GGGTTTCTCTGTATAACCCTGGCTGTCCTGGAACTCACTTTGTAGATCAG
CTTCGAACCCAGAAATCTGCCTACCTCTGCCTCCCAAGTGCTGGGATTAA
AGGCATGTGCTACCACTGCCTGGCTATGAAGAACATTCTTTGAGAAGACN
AAAAGGAAAAGAGAAATGGGAAGTAGGAGAAGAATAAGAACANAATGTGT
GTGTGTGTGTGTGTGTGTCTGTGTGTGTCTGTGTATGG

GAGGCCTGGNGGCCGCCGGGCCGTCTNCATTGAGGGTGAACNATAGAAGG
ACTTCAAACATTAAGTGTCTGTTGCTATATCTCCCTTTTGATTTCTGATT
TTGTTAATTTGGGCACTGTCTCTTTGCTTTTTTAGTTAGTTAAGGGCTTG
TCCATCTTGTTGATTTTCTCAAAGAACCATCTCTTGGTTTTGTTGATTCT
TTGTATTTTTTGTTTGTTTGTTTCTAATTGGTTGATTTCAGCCCTGGGTT
GTATTATTTTCTGCTGTCTACTCCTCCTGGGTATGTTTTCTTCTTGTTCT
TGTTCTTGTTCACTAAGTTGTTCTTCCTCCTCCTTCTTCTTCTTCTCCTT
CTTCTTCTCCTCCTCTTCTTTTCTTCTTCTTCTTCTTCTTCTTCTTCTTC
TTCTTCCTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTT
CTTCTTCTTCTTCTTCTTCCTCCTCCTCCTCCTCCTCCTCTTCCTCCTCC
TCCTTCTCTACTCCCTCCTCCTCCTCTTCTCCTCCTCCCCCTCCCCCTAC
CCTCTTCCTCCTCCTCCTCCTCCTCCTACTCTTTCTTTTTCATTTATAAT
TATTTCTTTTTATTCTATCTATCTTTTTTTATTTCTCCCCATTTTTTTTT
TTTTTTTTTTTTGCAAATTTGTTTAATACCTACATTCTATTATTACTTAA
GGTTTATGTTAAATCTTTTGATATACGCATCTCATTTACATATTTCGATC
AACTAACGATCT

Query= MSMg01no491_l16.b1 MSMg01no491_l16.b1 CHROMAT_FILE:
MSMg01no491_l16.b1 PHD_FILE: MSMg01no491_l16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:15:43 2005
         (609 letters)



>mm_chr1_144757346_144758353
          Length = 1008

 Score =  977 bits (505), Expect = 0.0
 Identities = 589/637 (92%), Gaps = 33/637 (5%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcagtaccaattttgattgccatgaaattaagtacattttactgagcaccttaaac 64
           ||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcagtaccaaaaatgattgccatgaaattaagtacattttactgagcaccttaaac 264

                                                                       
Query: 65  ccaaaaactgagaaatatacagaggacttccagagaggcagaacaaaaattaatttgtag 124
           |||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct: 265 ccaaaaactgagaaatatacagaggactgccagagaggcataacaaaaattaatttgtag 324

                                                                       
Query: 125 ataatgggtgacttataattaagattatattaaatatgtatatgatgagtaaaaatatgt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ataatgggtgacttataattaagattatattaaatatgtatatgatgagtaaaaatatgt 384

                                                                       
Query: 185 atacaaatattcattaaaatatgtattctgtatatatgcaaaatggaattttaattgagc 244
           ||||||||||| ||||||| ||||||||||||| |||| | |||||||||||||||||||
Sbjct: 385 atacaaatatttattaaaa-atgtattctgtatttatgtataatggaattttaattgagc 443

                                                                       
Query: 245 attaaagaaaaattaaattgtggcatttgtaggaaaatgggatagaattagagatcatta 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 attaaagaaaaattaaattgtggcatttgtaggaaaatgggatagaattagagatcatta 503

                                                                       
Query: 305 ggtatagcaagacaggcctggttcctttcatatgtagaatcttaatttaaatatatatgc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ggtatagcaagacaggcctggttcctttcatatgtagaatcttaatttaaatatatatgc 563

                                                                       
Query: 365 atgcatatatacatatacatgttcatttcatatttatatacatgaagaacattctttctt 424
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 564 atgcatatatacatatacatgttcatttcatattcatatacatgaagaacattctttctt 623

                                                                       
Query: 425 tctttcttt---tcttt-----------------------------tttttttttttttt 452
           |||||||||   |||||                             ||||||||||||||
Sbjct: 624 tctttctttctttctttctttctttctttctttctttctttctttctttttttttttttt 683

                                                                       
Query: 453 ggcttttttgagacagggtttctctgtataaccctggctgtcctggaactcactttgtag 512
           ||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 684 ggcttttttgagacaaggtttctctgtataaccctggctgttctggaactcactttgtag 743

                                                                       
Query: 513 atcagcttcgaacccagaaatctgcctacctctgcctcccaagtgctgggattaaaggca 572
           | ||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 744 accagcttcaaacccagaaatctgcctgcctctgcctcccaagtgctgggattaaaggca 803

                                                
Query: 573 tgtgctaccactgcctggctatgaagaacattctttg 609
           |||||||||||||||||||||||||||||||||||||
Sbjct: 804 tgtgctaccactgcctggctatgaagaacattctttg 840


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 50
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 609
Length of database: 1008
Length adjustment: 10
Effective length of query: 599
Effective length of database: 998
Effective search space:   597802
Effective search space used:   597802
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)