Query= MSMg01no491_m16.b1 MSMg01no491_m16.b1 CHROMAT_FILE:
MSMg01no491_m16.b1 PHD_FILE: MSMg01no491_m16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:15:48 2005
(670 letters)
>mm_chr1_88982080_88983149
Length = 1070
Score = 1234 bits (638), Expect = 0.0
Identities = 666/684 (97%), Gaps = 15/684 (2%)
Strand = Plus / Plus
Query: 2 ggaattccaggctct-atcactccgtgcagtgcccccacagggttttctatgagtccctg 60
||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 187 ggaattccaggctctaaccactccgtgcagtgcccccacagggttttctatgagtccctg 246
Query: 61 caatcagggaactccccactccagggtagagtattgtggaaggacaccctt--------- 111
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 caatcagggaactccccactccagggtagagtattgtggaaggacacccttccccccccc 306
Query: 112 -----cccccgatgctgggtagaccagagtgggtggggctttaaccacttcttggctgga 166
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 ccccccccccgatgctgggtagaccagagtgggtggggctttaaccacttcttggctgga 366
Query: 167 gggaaagctttcagaactgtgctcctgaacttgtgacagtgaatgtttggcaagtcttct 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 gggaaagctttcagaactgtgctcctgaacttgtgacagtgaatgtttggcaagtcttct 426
Query: 227 agaatttcaaagttgtaggtttttgagataggctttctctccgtagccctagctgtccgg 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 agaatttcaaagttgtaggtttttgagataggctttctctccgtagccctagctgtccgg 486
Query: 287 gaactggttctgtagaccaggctagtccctcagcctccactgttttagtgaagcagacac 346
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 487 gaactggttctgtagaccaggctagcccctcagcctccactgttttagtgaagcagacac 546
Query: 347 tgggcaagaaaggcgaagacaaaagaaccaggctgtcaatgaagacctactatgcatcag 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 tgggcaagaaaggcgaagacaaaagaaccaggctgtcaatgaagacctactatgcatcag 606
Query: 407 actgaatgccctgtgctttccttctttcaactagagaactcccaaatctgcagcctggca 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 607 actgaatgccctgtgctttccttctttcaactagagaactcccaaatctgcagcctggca 666
Query: 467 tgtgtgttcaggatgaggcaggaaaggggtctagcaacctgattatgtgactggttgcaa 526
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 667 tgtgtgttcagcatgaggcaggaaaggggtctagcaacctgattatgtgactggttgcaa 726
Query: 527 gctgcttggaacctctcttccttcacaggttacagaggccaagcctcatcaggtcttttg 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 727 gctgcttggaacctctcttccttcacaggttacagaggccaagcctcatcaggtcttttg 786
Query: 587 ttgtggcccttggagatctctagctcctgaactggctctgccctgactctcccaaccagg 646
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 787 ttgtggcccttggagatctctagctcctgaactggctctgccctgactctcccaaccagg 846
Query: 647 caagacacccgaggcattgattgc 670
||||||||||||||||||||||||
Sbjct: 847 caagacacccgaggcattgattgc 870
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 670
Length of database: 1070
Length adjustment: 10
Effective length of query: 660
Effective length of database: 1060
Effective search space: 699600
Effective search space used: 699600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no491_m16.g1 MSMg01no491_m16.g1 CHROMAT_FILE:
MSMg01no491_m16.g1 PHD_FILE: MSMg01no491_m16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:15:48 2005
(249 letters)
>mm_chr1_89154116_89154764
Length = 649
Score = 472 bits (244), Expect = e-138
Identities = 247/248 (99%)
Strand = Plus / Minus
Query: 1 ccaccaaggcaacaatgagattgagaggtacgcaataaatttaactcttgtcactattgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 ccaccaaggcaacaatgagattgagaggtacgcaataaatttaactcttgtcactattgg 389
Query: 61 ctacgtgcccttgaattagtacgcaaattctttgtacttgttccctcatttgcccaaccg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 ctacgtgcccttgaattagtacgcaaattctttgtacttgttccctcatttgcccaaccg 329
Query: 121 agataatgccaaggcctttgagggtggagtgcaatggaacacaagggaattagtgcttcg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 agataatgccaaggcctttgagggtggagtgcaatggaacacaagggaattagtgcttcg 269
Query: 181 cagacatctgctataaggaccccttctgcggacaagcgcgggggtgggggaaggggggac 240
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 cagacgtctgctataaggaccccttctgcggacaagcgcgggggtgggggaaggggggac 209
Query: 241 tggggcgg 248
||||||||
Sbjct: 208 tggggcgg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 649
Length adjustment: 9
Effective length of query: 240
Effective length of database: 640
Effective search space: 153600
Effective search space used: 153600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
