Query= MSMg01no491_p16.b1 MSMg01no491_p16.b1 CHROMAT_FILE:
MSMg01no491_p16.b1 PHD_FILE: MSMg01no491_p16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:16:04 2005
(680 letters)
>mm_chr1_150951171_150952251
Length = 1081
Score = 1257 bits (650), Expect = 0.0
Identities = 674/682 (98%), Gaps = 2/682 (0%)
Strand = Plus / Minus
Query: 1 agaggaaaatagtattcttagtttcaaatgaagtatgtgtgcaaatctatgcacgtcttt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 797 agaggaaaatagtattcttagtttcaaatgaagtatgtgtgcaaatctatgcacgtcttt 738
Query: 61 tttgtatgaatgtgttttctaaatattttatttcattcagtgtaatgttgtaaatatacc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 tttgtatgaatgtgttttctaaatattttatttcattcagtgtaatgttgtaaatatacc 678
Query: 121 aca-tttttaatcctgttgacaaatgtgcaccattttttatgtagtaggagtctcagaaa 179
||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 677 acattttttaatcctgttgacaaatgtgcaccaatttttatgtagtaggagtctcagaaa 618
Query: 180 gtgaaataggcccagactctcataatttctgagaggccctgcttagaagacctattcatc 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 gtgaaataggcccagactctcataatttctgagaggccctgcttagaagacctattcatc 558
Query: 240 ttacagaaaaacatcctgacataattgatgccaacatcactttctcccctcttataggct 299
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 557 ttacagaaaaacatcctgacataattgatgccaacatcactttctcccctctcataggct 498
Query: 300 ggaagttttcaatagtttattgtaaaagagcaaccactgctctatctagcaatgaatgta 359
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 497 ggaagttttcaatagtttattgtaaaagagcaaccactcctctatctagcaatgaatgta 438
Query: 360 caggattctattccattctacccatcccttcatcttatttcttgaagttcactcctatat 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 caggattctattccattctacccatcccttcatcttatttcttgaagttcactcctatat 378
Query: 420 cctcaagacttcttaacaggtgtatttcacaagttgttcagcctgagatacagtctctct 479
|||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 377 cctccagacttcttaacaggtgtatttcataagttgttcagcctgagatacagtctctct 318
Query: 480 actcactctatatatgaatgagctatattttgtctccatagtctctggtattcatttaca 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 actcactctatatatgaatgagctatattttgtctccatagtctctggtattcatttaca 258
Query: 540 tacacttacacattcactagaagcaaagcactattctcagatatgtgttatgcagtgaac 599
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 257 tacacttacacattcactagaagcaaagcactattctcagatatgtgttaggcagtgaac 198
Query: 600 aacaacaataacaacaac-aaaaaaccctctgtatgtagtggttgttatatcttagacat 658
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 197 aacaacaataacaacaacaaaaaaaccctctgtatgtagtggttgttatatcttagacat 138
Query: 659 tttatttatgttatttttttca 680
||||||||||||||||||||||
Sbjct: 137 tttatttatgttatttttttca 116
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 680
Length of database: 1081
Length adjustment: 10
Effective length of query: 670
Effective length of database: 1071
Effective search space: 717570
Effective search space used: 717570
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no491_p16.g1 MSMg01no491_p16.g1 CHROMAT_FILE:
MSMg01no491_p16.g1 PHD_FILE: MSMg01no491_p16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:16:04 2005
(674 letters)
>mm_chr1_150892930_150894004
Length = 1075
Score = 1224 bits (633), Expect = 0.0
Identities = 662/673 (98%), Gaps = 4/673 (0%)
Strand = Plus / Plus
Query: 3 gctcaaaattataaatataggaagttattaatataataataataacagaactacttagaa 62
||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 206 gctcaaaattatacatataggaagttattaat---ataataataacagaactacttagaa 262
Query: 63 gataaaaagagtatgaagaaaggtaaaaacttttcagataaatagggtaaaacattattt 122
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 gacaaaaagagtatgaagaaaggtaaaaacttttcagataaatagggtaaaacattattt 322
Query: 123 tcaaatcaaagtttttccattacagttagactggaaaatctatccatgagctttttggtg 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 tcaaatcaaagtttttccattacagttagactggaaaatctatccatgagctttttggtg 382
Query: 183 acatatttacaccaatatcccatctagttcattatgaaaattgtatttaagagtatatca 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 acatatttacaccaatatcccatctagttcattatgaaaattgtatttaagagtatatca 442
Query: 243 aggatgtcatttattttt-aaaaaactcttaatttattcaggggcaagactgaaacattg 301
|||| | ||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 aggaaggcatttatttttaaaaaaactcttaatttattcaggggcaagactgaaacattg 502
Query: 302 aaagagattttaaaagacatgatagcttattcaaatgaaacaaactgaacttagaagagg 361
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 503 aaagagattttaaaagacatgatagcttattcaaatgaaacaaactgaactgagaagagg 562
Query: 362 atatctccttgattcccttcatcttgttactttaaaagtaacaattctaaagcatttaga 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 atatctccttgattcccttcatcttgttactttaaaagtaacaattctaaagcatttaga 622
Query: 422 aaatgtgtaaacacatttctagtccaatgaagtttataactaattttcactgccatgtga 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 aaatgtgtaaacacatttctagtccaatgaagtttataactaattttcactgccatgtga 682
Query: 482 cacttcttacatccagtccggttaattatctacaacccttaagtgacattttaaatcctt 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 cacttcttacatccagtccggttaattatctacaacccttaagtgacattttaaatcctt 742
Query: 542 tgttgctcactgaaaaaatgtgtaaaataaaactaagtgctatattcgttaaaatgccca 601
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 743 tgttgctcactgaaaaaatgtgtaaaataaaactaagtgctatatttgttaaaatgccca 802
Query: 602 aaataattttcaagtccaaagagtaagatattttcaatgcatcatcatcatcatcaacct 661
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 803 aaataattttcaagtccaaagagtaagatattttcaatgcatcatcatcatcaccaacct 862
Query: 662 ctcaggagggcaa 674
|||||||||||||
Sbjct: 863 ctcaggagggcaa 875
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 674
Length of database: 1075
Length adjustment: 10
Effective length of query: 664
Effective length of database: 1065
Effective search space: 707160
Effective search space used: 707160
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
