TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCTTCTATCCACATAACCAAAGTCCCCAATATCTTGTAAACACCTGG
CCATTCTGACTTCATTTTAACTTTTAATCTCTAACTTGAATTCTCTCTTT
CATGATTCAATCATCTGTCTTTTGTGGAAATCTCTCCCCAGATGTGATAA
CCCCCCTATGACAGCCTTCATATAGCAAGAAGCTGGCTAGATTCTGGGTC
GCTGTGCTCATGATGGGTTTTGGGTTGACCTCATGTGCATGTATCTTTCT
TTCATATTTTAGGAAGTTTGACATGGGGAGGCCGCCTTTAGAAAAGCAAA
TAGGAATGCATGATTTTAAAAGTCAAGTGTTATTGAAATGTTAGCTTCCT
CGACTCCCCTCTCTTTCAGTTCAAAGCAAGTAAATATTCTAGAGTTTCTG
TTCCTGACTTTCCCTCTCTCGATAGCCTATTTATATTCCCCTGAATTCAC
ACATTTTCTTCCTAGCAATTAACCCTGATACACTGTCCTCTCCTGTTACT
TCTGACCAAGACAAGTATGTTGACAAAGGGCGCCTGCAATAGCCTGTATA
GGGTCTCAGAGCTCTGAGCTAGCACACGCCAGTACCTTGCAGAGTTCACC
TCTGGCCATCCCTCAATGAGGAGAATATTGCAATCTTGGAAGGGGAGAAA
AAGGTCAAAAAGGATGTTAAAG

CATGCAGTGGGAGGCTGGCGGCCGCCTGTTTTTCTCNNNNNAAAAAACAA
AATTTNTTTTGTTAAAGNNGGGTTTGGAAACACTATAGAATTATCCGCTG
GAATTCTTTAAAAAAAAAAAAAAACAAAAAACAAAACCTAAAAAAACCAA
TGGTTAGAAAAGGGTTCTGTTAAGGTAGTTTGGTGAGGGGCNTTCTCGGG
TTCGTGGGCTGTCCATGGTTAGAGGTCACAGNTTGTCACTACAGTNGACA
GTGGGGATTGGGTCAGGGTCTGTTTAAAGTGGTTCGCAATTGCCTGGGTG
GAAGTGGAGAGCCTCTGCTTGTCTGCTGAAGGGCGGGGGCCGGAAAGCCA
ACGTGCGCCGTCCGCTTTATCCAACACCTCCCATTTTCCTGGGCCGCAAA
AAGGTTCCCTTTCTAGAATTTTGGGCCCGGGGGGTTTTTGGAAACCCAAA
CCTGGGAAAAACCAANTCCCCCAAAGAGGATTTTTCCTTTACCCCAAATT
TTTTTTTTAAAGAGGGCCTTTTTCTCCCCCCTCCCCCCTTTTTTTTTTTT
TTTTCCCCCCTTTTTCCTTTTTTTTCCCCCCCCCCCCAAAAATTCCCCTC
TTTTTAAAAAAAAATTTTTTTTTTTTTTTCTCGCGGAAAAAAAAAAGAGG
GGGTGGTTTCTTTTTTTT

Query= MSMg01no492_b05.b1 MSMg01no492_b05.b1 CHROMAT_FILE:
MSMg01no492_b05.b1 PHD_FILE: MSMg01no492_b05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:16:12 2005
         (670 letters)



>mm_chr1_140817949_140819011
          Length = 1063

 Score = 1147 bits (593), Expect = 0.0
 Identities = 645/665 (96%), Gaps = 9/665 (1%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccttcta-tccacataaccaaagtccccaatatcttgtaaacacctggccattct 63
           |||||||||| |  ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 861 gaattccttcaacaccacataaccaaagtccccaatatcttgtaaacacctggccattct 802

                                                                       
Query: 64  gacttcattttaacttttaatctctaacttgaattctctctttcatgattcaatcatctg 123
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 801 gacttcattttaacttttaatctctaacttgaattttctctttcatgattcaatcatctg 742

                                                                       
Query: 124 tcttttgtggaaatctctccccagatgtgataacccccctatgacagccttcatatagca 183
           |||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||
Sbjct: 741 tcttttgtggaaatctctccccagatatgataa-ccccctatgacagccttcatatagca 683

                                                                       
Query: 184 agaagctggctagattctgggtcgctgtgctcatgatgggttttgggttgacctcatgtg 243
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 682 agaagctggctagattctgggtcgctgtgctcatgat-ggttttgggttgacctcatgtg 624

                                                                       
Query: 244 catgtatctttctttcatattttaggaagtttgacatggggaggccgcctttagaaaagc 303
           ||||||    ||||||||||||||||||||||||||||||||||| |||||| |||||||
Sbjct: 623 catgta----tctttcatattttaggaagtttgacatggggaggcagcctttggaaaagc 568

                                                                       
Query: 304 aaataggaatgcatgattttaaaagtcaagtgttattgaaatgttagcttcctcgactcc 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 aaataggaatgcatgattttaaaagtcaagtgttattgaaatgttagcttcctcgactcc 508

                                                                       
Query: 364 cctctctttcagttcaaagcaagtaaatattctagagtttctgttcctgactttccctct 423
           |||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||
Sbjct: 507 cctctctttcagttcaaagcaagtaaatattct--agtttctgttcctgactttccctct 450

                                                                       
Query: 424 ctcgatagcctatttatattcccctgaattcacacattttcttcctagcaattaaccctg 483
           |||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 449 ctcgctagcctatttatattcccccgaattcacacattttcttcctagcaattaaccctg 390

                                                                       
Query: 484 atacactgtcctctcctgttacttctgaccaagacaagtatgttgacaaagggcgcctgc 543
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 389 atacactgtcctctcctgttacttctgaccaagacaagtatgttgacaaagggcacctgc 330

                                                                       
Query: 544 aatagcctgtatagggtctcagagctctgagctagcacacgccagtaccttgcagagttc 603
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 329 aatagcctgtatagggtctcagagctctgagctagcacatgccagtaccttgcagagttc 270

                                                                       
Query: 604 acctctggccatccctcaatgaggagaatattgcaatcttggaaggggagaaaaaggtca 663
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 269 acctctggccatccctcaatgaggagaatattgcaatcttggaaggggagaagaaggtca 210

                
Query: 664 aaaag 668
           |||||
Sbjct: 209 aaaag 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 670
Length of database: 1063
Length adjustment: 10
Effective length of query: 660
Effective length of database: 1053
Effective search space:   694980
Effective search space used:   694980
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)