BAC Information

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BAC

Clone NameMSMg01-492C21
Chromosome1 (Build37)
Map Location 147,841,562 - 147,842,182
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC625057, LOC383570
Downstream geneLOC383571, B830045N13Rik, LOC100043240
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-492C21.T7 (MSMg01no492_c21.b1)MSMg01-492C21.TJ (MSMg01no492_c21.g1)
ACCAG569997AG569998
length710705
length of high quality
(start - end)
604 (43 - 646)629 (77 - 705)
definitionCHROMAT_FILE: MSMg01no492_c21.b1 PHD_FILE: MSMg01no492_c21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:16:20 2005CHROMAT_FILE: MSMg01no492_c21.g1 PHD_FILE: MSMg01no492_c21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:16:20 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGGATCCGCG
GAATTCTCACCTGTCCAATACCGAATGGCAGAGAAGCACTTGAAAAAATT
TTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGAT
TCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGC
AGATGCTGGCGTTGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTG
GGAGTGCAGGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGTTCCTCA
GAAAATTGGACATAGTACTACCGGAGGATCCAGCAATACCTCTCCTGGGC
ATATATCCAGAAGATGCCCCAACAGGTAAGAAGGACACATGCTCCACTAT
GTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCTAGAT
GCCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATCTACACAATG
GAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTAGCCAA
ATGGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAACACATTCACAAA
GAAACTCACACAATATGTATTCACTGATAAGTGGATATTAGCCCCAAACC
TAGGATACCCCAGATATAAGATATAATTTGCTAAACACATGAAACTCAAG
AAGAATGAAG
NNNCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACTTTGTAGACCAGGCTGGTCTCG
AACTCAGAAATCTGCCTGCCTCTGCTTCCCAAGTGCTGGGATTAAAGGTG
TGCGCTACCATGCCCAGGAAAGCTCCATTTCTACTGACTAGTTTGTATAG
TGCTGGCAGGTGCTATCAATGCTCCCAGAGGACAAAAGTAGTCATCTTTC
TTGTCCGAATATGAACATTGAGAGCTACGATGATAGGCCACATCTCACCT
CTTTCTAGATTCAAAGACTTTCTCTACCTACTCAACTCTGTGTGCTTTTG
TTTTCCTCACAAAGTCCAATTCATGCTGCTCATAAATTCTTGAATGTGTG
GTCTTCTACTCGAGCTTGCTCAACCCACAAGGGGACACCTAGTCAAAGAA
AAGTTACAATTTCTATCTCAGTAAAAATCAATTAACAATATTGATTAATT
GAATTAAAGCTCAGTTAAAGGTAGAACTCCATGCCCAGCTACCCATTTGA
TTTGGGTACATTTTTTCTTGGATTTAAGCTTGCATATGACTTGTCTGTGT
TGTCTTTTCTTGAAATTGGTGCCAGGTATTGGTTTTATTTTGTGCACTGA
GCTTCATAGCTAACCATAAAGTATTGGACCATTTCTATGACCTTTGTGAC
ACTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no492_c21.g1 MSMg01no492_c21.g1 CHROMAT_FILE:
MSMg01no492_c21.g1 PHD_FILE: MSMg01no492_c21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:16:20 2005
         (629 letters)



>mm_chr1_147841362_147842390
          Length = 1029

 Score = 1154 bits (597), Expect = 0.0
 Identities = 615/621 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   actttgtagaccaggctggtctcgaactcagaaatctgcctgcctctgcttcccaagtgc 60
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 201 actttgtagaccaggctggtctcgaactcagaaatctgcctgcctcttcttcccaagtgc 260

                                                                       
Query: 61  tgggattaaaggtgtgcgctaccatgcccaggaaagctccatttctactgactagtttgt 120
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgggattaaaggtgtgcgccaccatgcccaggaaagctccatttctactgactagtttgt 320

                                                                       
Query: 121 atagtgctggcaggtgctatcaatgctcccagaggacaaaagtagtcatctttcttgtcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atagtgctggcaggtgctatcaatgctcccagaggacaaaagtagtcatctttcttgtcc 380

                                                                       
Query: 181 gaatatgaacattgagagctacgatgataggccacatctcacctctttctagattcaaag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaatatgaacattgagagctacgatgataggccacatctcacctctttctagattcaaag 440

                                                                       
Query: 241 actttctctacctactcaactctgtgtgcttttgttttcctcacaaagtccaattcatgc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 actttctctacctactcaactctgtgtgcttttgttttcctcacaaagtccaattcatgc 500

                                                                       
Query: 301 tgctcataaattcttgaatgtgtggtcttctactcgagcttgctcaacccacaaggggac 360
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| 
Sbjct: 501 tgctcataaattcttgaatgtgtggtcttctactcgagcatgctcaacccacaaggggat 560

                                                                       
Query: 361 acctagtcaaagaaaagttacaatttctatctcagtaaaaatcaattaacaatattgatt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 acctagtcaaagaaaagttacaatttctatctcagtaaaaatcaattaacaatattgatt 620

                                                                       
Query: 421 aattgaattaaagctcagttaaaggtagaactccatgcccagctacccatttgatttggg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 621 aattgaattaaagctcagttaaaggtagaactccatgcccagctacccatttgatttggt 680

                                                                       
Query: 481 tacattttttcttggatttaagcttgcatatgacttgtctgtgttgtcttttcttgaaat 540
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tacattttttcttggatttgagcttgcatatgacttgtctgtgttgtcttttcttgaaat 740

                                                                       
Query: 541 tggtgccaggtattggttttattttgtgcactgagcttcatagctaaccataaagtattg 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tggtgccaggtattggttttattttgtgcactgagcttcatagctaaccataaagtattg 800

                                
Query: 601 gaccatttctatgacctttgt 621
           |||||||||||||||||||||
Sbjct: 801 gaccatttctatgacctttgt 821


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 629
Length of database: 1029
Length adjustment: 10
Effective length of query: 619
Effective length of database: 1019
Effective search space:   630761
Effective search space used:   630761
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)