Query= MSMg01no492_e21.b1 MSMg01no492_e21.b1 CHROMAT_FILE:
MSMg01no492_e21.b1 PHD_FILE: MSMg01no492_e21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:16:30 2005
(462 letters)
>mm_chr1_154773311_154774172
Length = 862
Score = 839 bits (434), Expect = 0.0
Identities = 453/462 (98%), Gaps = 5/462 (1%)
Strand = Plus / Plus
Query: 4 ggaattcactgtataccctaaactgccctcaaactttaagtacttctcctgcctcagctt 63
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcactgtatagcctaaactgccctcaaactttaagtacttctcctgcctcagctt 263
Query: 64 ccagatcgtggagattgcaggtataaaccaccatacacaagttgaatagccacctaggct 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ccagatcgtggagattgcaggtataaaccaccatacacaagttgaatagccacctaggct 323
Query: 124 ctaggctacatgagatattgtctcaaaatttaaaaaaagaagaagaaagagagaataaaa 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ctaggctacatgagatattgtctcaaaatttaaaaaaagaagaagaaagagagaataaaa 383
Query: 184 tgataaaaggacctataagatggcttctctaaggtgtttatagccaagcctgaaggccca 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tgataaaaggacctataagatggcttctctaaggtgtttatagccaagcctgaaggccca 443
Query: 244 agtttaatctcagaatccccggcagaggtaggcggatttctgagtttgaggccagcctgg 303
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 444 agtttaatctcagaatccccggcagaggcaggcggatttctgagtttgaggccagcctgg 503
Query: 304 tctacaaggtgagttccaggacagccaggactatacagagaaaccctgactcgaaaaaga 363
||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct: 504 tctacaaggtgagttccaggacagccagggctacacagagaaaccctgactcgaaaaaga 563
Query: 364 aaagaaaagaaaagaaaagaaaagaaaagaaaagaaaagaaaagaaaagaaaagaaaag- 422
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 aaagaaaagaaaagaaaagaaaagaaaagaaaagaaaagaaaagaaaagaaaagaaaagg 623
Query: 423 ----agagaagggaagggaagggaagggaagggaagggaagg 460
||||||||||||||||||||||||||||||||||||||
Sbjct: 624 aaagagagaagggaagggaagggaagggaagggaagggaagg 665
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 88
Number of extensions: 27
Number of successful extensions: 27
Number of sequences better than 10.0: 1
Number of HSP's gapped: 23
Number of HSP's successfully gapped: 1
Length of query: 462
Length of database: 862
Length adjustment: 10
Effective length of query: 452
Effective length of database: 852
Effective search space: 385104
Effective search space used: 385104
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no492_e21.g1 MSMg01no492_e21.g1 CHROMAT_FILE:
MSMg01no492_e21.g1 PHD_FILE: MSMg01no492_e21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:16:30 2005
(470 letters)
>mm_chr1_154953204_154954072
Length = 869
Score = 886 bits (458), Expect = 0.0
Identities = 467/470 (99%), Gaps = 1/470 (0%)
Strand = Plus / Minus
Query: 1 agaggaattggctgtaagagagaagtaaagaatggtctgggggaggaggaggccaggagc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 543 agaggaattggctgtaagagagaagtaaagaatggtctgggggaggaggaggccaggagc 484
Query: 61 taggaacacagccccttgtctagaagagttggttatctgactgccctacaccctccggga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 taggaacacagccccttgtctagaagagttggttatctgactgccctacaccctccggga 424
Query: 121 gtataaatagtcactgtttataactgtgtccatagctgtagaagaatggtcttatgttta 180
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 423 gtataaatagtcactgtttataactgtgtccatagctgtagaagaatggtc-catgttta 365
Query: 181 taaccacgaggtttgctgtatcgggggagtccttagccctgatccttctcacatggatgt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 taaccacgaggtttgctgtatcgggggagtccttagccctgatccttctcacatggatgt 305
Query: 241 cctggccttgatgctaatttcttgcctttttcagtctgttcccaacattcagacctctac 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 cctggccttgatgctaatttcttgcctttttcagtctgttcccaacattcagacctctac 245
Query: 301 ttttggatgataccatctccattatgttatattaaactttcatcggaggtgggaatacag 360
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 244 ttttggatgataccatctccattatgttatattaaactttcatcgggggtgggaatacag 185
Query: 361 ctcactgatagcgcttgccaggcatgtctgaagccagggctcagtccctagctctgccta 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 184 ctcactgatagcgcttgccaggcatgtctgaagccagggctcagtccctagctctgccta 125
Query: 421 aaccaggcatgatggtatatacctctaatcccagcactcgagagatggag 470
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 124 aaccaggcatgatggtatatacctctaatcccagcactcgagagatggag 75
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 470
Length of database: 869
Length adjustment: 10
Effective length of query: 460
Effective length of database: 859
Effective search space: 395140
Effective search space used: 395140
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
