BAC Information

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BAC

Clone NameMSMg01-492G02
Chromosome1 (Build37)
Map Location 195,706,779 - 195,707,015
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039677, Syt14, AA408296, Irf6, A130010J15Rik, Traf3ip3, Hsd11b1, G0s2, Lamb3, Camk1g, LOC667208
Downstream geneEG623172, Plxna2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-492G02.T7 (MSMg01no492_g02.b1)MSMg01-492G02.TJ (MSMg01no492_g02.g1)
ACCAG570150AG570151
length725723
length of high quality
(start - end)
227 (68 - 294)244 (74 - 317)
definitionCHROMAT_FILE: MSMg01no492_g02.b1 PHD_FILE: MSMg01no492_g02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:16:35 2005CHROMAT_FILE: MSMg01no492_g02.g1 PHD_FILE: MSMg01no492_g02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:16:35 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTCTGGTTTGCTGTTCCCCATTTTTTAATAGTGTTATCTGGTTCTCTGG
AGTCTAACTTTTTGAGTTCTTTGTATATATTGGACATTAGCCCTCTATTG
GATATAGGGTTGGTAAAGATCTTTCCCAATATGTTGGTTGCCATTTTGTT
TAATTGACAGTATCCTCTGCCTTACAGAAGATTTGCAATTTTATGATGTC
CCATTTGTCGATTCTTGATCTTAGAGCAAGTGTTCTGGTCAGGAAATTTC
GCCCCTGTGCCTATGTTTTTGAGCCTTTTCCCCACTTTCTTTTCTATTAG
ATTTAGTGTATCTGGTTTTATGTGGAGGTCCTTGATCCACTTGGACTTGA
GGGTTGTACAAGGAGATTAGAATGGATCAATTTGCATTCTTCTACATGTT
GACCGCCAGTTGAACAAGCACCATTTGCTGAAAATTCTCTTTTTCCACTG
GATGGTTCTATCTCCGCTGCCAAAGACTAAGTGACTGTAGGTGTGTGGGC
TTATTTCTGGGTCTCCAATTCTATCTATTCTATCGATCTACCTGCCTGTC
CCTTTATCCATACCTTGCTCTTTTTTACACAATTGCCTCTGTATTTTAGC
TTTGACCTCCGCGATGTTGAATCCCCATAAGGTTCTTTTATTGTTGAAGA
CTAGTTTTTGCCAATTCTTGGCCTC
ATACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCTCATATGCTATAAAGGGAAGCTGGAG
CTAGGGTGAGGGGGAGATAAAAAGAGACATGGATAAATTAGAAAAAGTGG
GCTGAAAAGTTGTAGACACTGTTTTATCAGCACATCAGAAGCCAACATTT
TCTGTCCCACTTCTCAGAACCTCTATACTTACCTTTTCCACCTTGTCTAA
AGATGGGAATGCTAGAAACCACCCAGTGACTCCTGATGCTGTGTTTCCTG
AGGCCCAAGAAATATTGTTTACATGGCCAAACCTGGCGAGTCTATATAGG
ATCGACTCCATAGCACTATCGTGGTGGTCATGTCCTGTGACGGGGTAGAC
TGAGAAGGCTCAAAATCTTGTTTATTCTGGGATAAAATGGATGCCGATCT
AGAATCAGAAATGTTTACTCATTGTATAGGCCATGAAGTAAATCGGTCTC
TCCCGTTTAAGGATTAAGACTGGCAAGAAGGACACATGCTCCACTATGTT
CATAGCAGCCTTATTTATAATAGCCAGAAGCTGTATAGAACCTAGATGCC
CCTCTACATAGGAATGGATACTGAAAATGTGGTACATCTAGTCAATGGAG
TATTACTCATCTATTAACAAGAATGAATTTAGTAAATTTCTAGCCTAAAG
GATGGACCTTGGAGGGCATTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no492_g02.g1 MSMg01no492_g02.g1 CHROMAT_FILE:
MSMg01no492_g02.g1 PHD_FILE: MSMg01no492_g02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:16:35 2005
         (244 letters)



>mm_chr1_195706579_195707215
          Length = 637

 Score =  422 bits (218), Expect = e-122
 Identities = 235/244 (96%), Gaps = 7/244 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctcatatgctataaagggaagctggagctagggtgagggggagataaaaagagacatgga 60
           ||||||||||||||||||||||||||||||||||      ||||||||||||||||||||
Sbjct: 437 ctcatatgctataaagggaagctggagctagggt------gagataaaaagagacatgga 384

                                                                       
Query: 61  taaattagaaaaagtgggctgaaaagttgtagacactgttttatcagcacatcagaagcc 120
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 -aaattagaaaaagtgggctgaaaagttgtagacactgttttatcagcacatcagaagcc 325

                                                                       
Query: 121 aacattttctgtcccacttctcagaacctctatacttaccttttccaccttgtctaaaga 180
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 324 aacattttctgtcccacttctcagaacctctatacttacctttcccaccttgtctaaaga 265

                                                                       
Query: 181 tgggaatgctagaaaccacccagtgactcctgatgctgtgtttcctgaggcccaagaaat 240
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 264 tgggaatgctagaaaccacccagtgactcctgatcctgtgtttcctgaggcccaagaaat 205

               
Query: 241 attg 244
           ||||
Sbjct: 204 attg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 637
Length adjustment: 9
Effective length of query: 235
Effective length of database: 628
Effective search space:   147580
Effective search space used:   147580
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)