BAC Information

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BAC

Clone NameMSMg01-492H03
Chromosome1 (Build37)
Map Location 72,789,317 - 72,789,622
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC675667, EG667931, EG433319, LOC667937, LOC100043255, Mreg, Pecr, Tmem169, Xrcc5, March4, Smarcal1, Ankar, Rpl37a
Downstream geneIgfbp2, Igfbp5, LOC672187, LOC100042860, Tnp1, 1700027A15Rik, Pinc, LOC672208, LOC100043291
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-492H03.T7 (MSMg01no492_h03.b1)MSMg01-492H03.TJ (MSMg01no492_h03.g1)
ACCAG570199AG570200
length737859
length of high quality
(start - end)
586 (43 - 628)---
definitionCHROMAT_FILE: MSMg01no492_h03.b1 PHD_FILE: MSMg01no492_h03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:16:40 2005CHROMAT_FILE: MSMg01no492_h03.g1 PHD_FILE: MSMg01no492_h03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:16:41 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTGTGATTTACAAAGCTTAACCCTGCTGGCCCCCTTTTCTGGAATCTCT
TCCCGCTTGGCTTTTCTCTCCCTGCTTCCTGGATTCTTTTTTTTTTTTAA
ATATTTATTTATTTATTATATGTAAATACACTGTAGCTGTCCTCAGACAC
TCCAGAAGAGGGAGTCAGATCTTGTTATGGATGGTTGTGAGCCACCATGT
GGTTGCTGGGATTTGAACTCCTGACCTTCGGAAGAGCAGTCGGTGCTCTT
AACCGCTGAGCCATCTCACCAGCCCTGCTTCCTGGATTCTTGTTCTATGT
CTGTGCTATCTAATGCCTCAGTCTTAATGGCTGCTTTCCTCGGAGCAGGT
AATGTTGAGACTGCCAAGTCCAGACATCAGTAATCTCTCTTTTCCTCGGT
GTCACAGGATTCATCCAAAGTCCTCGCAGCTTTCCAGTGGACACCTCTGC
TTCTGGCTTGTTGCTTGTGTGCTAATTCCATGTGGATAGCCCATCTTGTC
AAGTCTCTGTTTCCAAAGCCAAATGAACCCCACCCCACTTACTTAGCCAA
GGCTGCCTCATTGCCGAGTCGCCCAGATCCAGACTGGCCTATGGCTACAG
CTGTGAGGAATTATCTTGATTAGTTGATTAGTGCTCACTGGGAACAGCAC
CATTCCCGAACAAGCACGTGGGGCTGGGGGGTAGATA
AATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XTTATTTGCGAAATTCAGGCATGCATGGTTTTAGATCTCAACGTACGGTT
TTATTTTGTTTTTGCTAAAATGNGGGTTTATTGTATGTTTGATTCAATAA
CAGGATCAGGGTGTGGTTTTTGGCTGGCGGGGGAGTCGGTGAAAAATTCN
CTNNAAAAACATTTTTATTAAAAACCTCCNAAAAATTAAAAAAATTTNAA
AAAATAANNNNTACGCTACGCGTTTTNNNNNTTATATTTTTATTTATCTG
NAAAAANNNNNANNNNNNNNNNNNNNTNNNNNNNNNNNNNNNNNNTNNNN
NNTTNNTTTTTTTTTTTTTTTTTTTTTNATTTTNAANANNNAAATTTATT
TTTNTTTTTTTTTTTTNNNNTTTTTTNNCTTNCTNTTNTTCNNTNTTTAT
CNTNATNCNNCTTTNTNCGTCTTTAATATTATATAATTTTTTANTCTTTT
TNTNNTTTTTNAACATTATCTTATCTTATTTTCTTCTTTTCCTTTCTTCC
TTCCCTCCTTCTTTTCTCTTTCTTTTTTTTTCTTTCCCCATCTTTCTCTT
TTATCAACCATTTATCTTCTCATTTCATTTCCTTCACTTTTCTATTTTTC
CCTTTCCCTTTTTTTCTCTTTACTCTCTTCTTTTATTATCTTATTTATCC
CTACCTTATTCCTTCTCTAATCACATCTTCTACTTATTTTCCTATCCATA
TTTTATTTTTCACCATTTTCATATTATTTTCTTATTACNTTTCACTTCTC
ATTTCATAATCTACCTTTCTTAACTTACGTTTTCTTTATTTTTCTATAAT
TTATTTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no492_h03.b1 MSMg01no492_h03.b1 CHROMAT_FILE:
MSMg01no492_h03.b1 PHD_FILE: MSMg01no492_h03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:16:40 2005
         (586 letters)



>mm_chr1_72788834_72789819
          Length = 986

 Score =  569 bits (294), Expect = e-166
 Identities = 303/306 (99%)
 Strand = Plus / Minus

                                                                       
Query: 281 ccctgcttcctggattcttgttctatgtctgtgctatctaatgcctcagtcttaatggct 340
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 789 ccctgcttcctggattcttgttctatgtctgtgctatctaatgccttagtcttaatggct 730

                                                                       
Query: 341 gctttcctcggagcaggtaatgttgagactgccaagtccagacatcagtaatctctcttt 400
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 729 gctttcctcggagcaggtaatgttgagactgccaagtccagacatcagtaatctctcttt 670

                                                                       
Query: 401 tcctcggtgtcacaggattcatccaaagtcctcgcagctttccagtggacacctctgctt 460
           |||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct: 669 tcctcggtgtcacaggattcgtccaaagtcctcgcagcttttcagtggacacctctgctt 610

                                                                       
Query: 461 ctggcttgttgcttgtgtgctaattccatgtggatagcccatcttgtcaagtctctgttt 520
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609 ctggcttgttgcttgtgtgctaattccatgtggatagcccatcttgtcaagtctctgttt 550

                                                                       
Query: 521 ccaaagccaaatgaaccccaccccacttacttagccaaggctgcctcattgccgagtcgc 580
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 ccaaagccaaatgaaccccaccccacttacttagccaaggctgcctcattgccgagtcgc 490

                 
Query: 581 ccagat 586
           ||||||
Sbjct: 489 ccagat 484


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 586
Length of database: 986
Length adjustment: 10
Effective length of query: 576
Effective length of database: 976
Effective search space:   562176
Effective search space used:   562176
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)