BAC Information

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BAC

Clone NameMSMg01-492I19
Chromosome1 (Build37)
Map Location 142,393,594 - 142,393,839
singlet/doubletsinglet
Overlap geneKcnt2
Upstream geneF13b, Cfhr1, EG624286, EG214403, BC026782, LOC545399, EG545367, Cfh
Downstream geneEG226472
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-492I19.T7 (MSMg01no492_i19.b1)MSMg01-492I19.TJ (MSMg01no492_i19.g1)
ACCAG570279AG570280
length1,370777
length of high quality
(start - end)
---246 (67 - 312)
definitionCHROMAT_FILE: MSMg01no492_i19.b1 PHD_FILE: MSMg01no492_i19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:16:49 2005CHROMAT_FILE: MSMg01no492_i19.g1 PHD_FILE: MSMg01no492_i19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:16:49 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TATGCGTAGAGGGGACCCCTATCGAGGGATTACAGATGTAATTCTACCAG
AAGAGCGCGGGGAAGTAAAGAAAGCGAGTGTTACAAGCAACAGAGAGAAT
ACAGCACATCGGCGAGTAATACGCGCGATCACCGTCATTACGGACGCACG
CTGATTGAAATCCAGCATGGGGCGAGAAATGCGGGAGTGCGGCGGCGGGA
AGAGTAGAGGCAACTAAACGGGATATACGAAATCGCCACGCCCGAGAAAT
CCAATTGTTCTTAGATACACTCGACGCAGCCAGACGAAGAGACTCATCAA
TATATGATCATTACGCATTCGTCAGCCAGTGCAACGACGAACAGGTTTCA
GTGATTGTTGTGAACACACTTGTAACACACCGTGCTTATTTGACGTNTTT
ATCACGATCAGAAATATTTCGTCATCCCCTATAGCCAGCTCCACGCGCGT
CTTCTAACCTCATGGTGGGTGGGTCGCAGTTGATGAATAGAACGTGTGTT
TCTGCGCGTATACCACCTCTGACATGTATGAAGATTTGGGAGACCACACG
CATGCGAGATAAGATAGTACTGGAGTGCGCGCAGCGTGATCACTGAGTCA
CGAATGACGCCTGAGTCGTATTGACAATATCAAGGACTGAGACCTCAATC
AGAGACGATGTTATATGAAGCACCGTACGAGATGCTGTTATGCCAGGACG
TATCTCTAGCGCCGCGTTGGTCCGTCGGCGATTGTATGGCGCTCCGTAGC
TAGCCCAGTACGACTATTTTGATATGCGTCTGGCAGGCGGCCGATTTGCG
ACTCGCACAGAGTCATGAGGACGACGATATATCCGCGAGGCTGTCCCCGT
CTTTGGACACCGTCATGGAGTTGCGCAGCTGTCTGTATTGTTACGTCAGT
GTCAACCATATCGTGTACAATACACGCATATGGGCGTGAAAGATAGCGGA
AGTATGAGAGGGAGGTGATGACGCGACGGAGACATCGAACTATGACGATA
TTTANATATGCGAGATATACAGACATACATCCTGTGTATACGACGGAGTA
CGCTCAGACGTGCGATTGAGCGCTCGNGAACGTAGAAGAGTATATCGACA
GGGAGTCTGCANAGATGTATACCGCGGATCGGTCGGTGATCGCGATCATA
AGTCTCGACGTTGCGCTGGAAGAGCTGTGATGACGGTCGGATCGTGGAGG
ACTAGACATAGGCATACAGCGCNGCATCTATGCGAAGAGCGATCTGTGTA
ATTAATAGCGATCATCATACACGTGTGCTACACAAAGTACATATATGANG
CGTCTCCGTGGATATCTATATTATGATCTTCACACCATCGCGCTGAGTCA
TGGGTGTAGTNGATATATAN
CXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCTAAAAGGTGAACTATAGA
AGGATTTTCGNAATCATTATAGTGTGCTAATTTGAAGGTACAGACACAAC
AGTGGAACATCCGTATTACAGTCACTGAAGTGCTCAAACAGAACCTAAAC
AGTAGGTATATTGTAAGAGCACAGCTATACTCTGAGACAGTACAAAGTTC
ATTTTGACTCCAAATGTATATTGATTCTGAAGTACAGATTTAACATATGA
GACATGAGAAAATGATGGTTGTAAGCTGTGATGTACAGTTTTACTAGGAC
AAATTAATTTCTTTTCTTCACATGACAGTTCTAAAACTATAAAAATCTTC
TACCCAAATGATCAGGATTTATTTATTTTATTTTCTCAANAATTGATGGG
AATTAAGTCAGTGTCTCCGAAACACCCCCATTTTAAAATACCCTGTGGCC
AAATCAACCTTTTAGGTTGGGTGAATTTTTAACCCAAACTATCCATTTGG
GGAACAATCCAACTTTTTGGACCCCTTTTAAATTTCTCTAAGGGGGGGCT
CTAATTTTCGGGGGGGACCTTCCCCCCCCTTTGGGGGACCTGGGGAAAAC
ACCTTTTTCCTTGGGGAAAAACACATTTTTTAACCCCCTCCTTTTGCAAA
AAAATTTTTTTTTGGGGAAAAAAAAACCTCCCCCCAAAAAAAAAACATTC
CCTCCTCTTAACGTTTTGTCTTTTTTCCCTCCCCCCCTCTTTTTAAAAAA
CACGTTCCTTCAAATTCACATTTTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no492_i19.g1 MSMg01no492_i19.g1 CHROMAT_FILE:
MSMg01no492_i19.g1 PHD_FILE: MSMg01no492_i19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:16:49 2005
         (246 letters)



>mm_chr1_142393394_142394039
          Length = 646

 Score =  468 bits (242), Expect = e-136
 Identities = 245/246 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttatagtgtgctaatttgaaggtacagacacaacagtggaacatccgtattacagtcact 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttatagtgtgctaatttgaaggtacagacacaacagtggaacatccgtattacagtcact 260

                                                                       
Query: 61  gaagtgctcaaacagaacctaaacagtaggtatattgtaagagcacagctatactctgag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaagtgctcaaacagaacctaaacagtaggtatattgtaagagcacagctatactctgag 320

                                                                       
Query: 121 acagtacaaagttcattttgactccaaatgtatattgattctgaagtacagatttaacat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acagtacaaagttcattttgactccaaatgtatattgattctgaagtacagatttaacat 380

                                                                       
Query: 181 atgagacatgagaaaatgatggttgtaagctgtgatgtacagttttactaggacaaatta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 381 atgagacatgagaaaatgatggttgtaagctgtgatgtacagttttactagtacaaatta 440

                 
Query: 241 atttct 246
           ||||||
Sbjct: 441 atttct 446


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 246
Length of database: 646
Length adjustment: 9
Effective length of query: 237
Effective length of database: 637
Effective search space:   150969
Effective search space used:   150969
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)