Query= MSMg01no492_l05.b1 MSMg01no492_l05.b1 CHROMAT_FILE:
MSMg01no492_l05.b1 PHD_FILE: MSMg01no492_l05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:17:00 2005
(476 letters)
>mm_chr1_90379814_90380689
Length = 876
Score = 774 bits (400), Expect = 0.0
Identities = 456/488 (93%), Gaps = 24/488 (4%)
Strand = Plus / Minus
Query: 1 tcaaagacagatgtaggaggaaaggaattgtcatgatccctcctgtcccacccttaccca 60
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 660 tcaaagacagatgtaggaggaaaggaattgtcatgatccctcctgtcccgcccttaccc- 602
Query: 61 cc---cc---------cagcttttctataatgaatagcatcactaaatcttcaggatact 108
|| || ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 601 ccgctccacacacacacagcttttctataatgaatagcatcactaaatctttaggatact 542
Query: 109 aaagttattttcattgtttaggaaattgaagtgcctagttggccaaattggcaaaaagat 168
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 541 aaagttattttcattgtttaacaaattgaagtgcctagttggccaaattggcaaaaagat 482
Query: 169 tgttagctctccctgaagcatgttatagacagtcagtaaagtatcccataacaagattca 228
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 tgttaactctccctgaagcatgttatagacagtcagtaaagtatcccataacaagattca 422
Query: 229 agtgtctgtgtaaagatcttttgatacactaagacccagtgctctgacctctccacattc 288
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 agtgtctgtgtaaagatctattgatacactaagacccagtgctctgacctctccacattc 362
Query: 289 cagtgcccttctttacagttcaagaggatcagaagtcaatggtagagggtctgagatttg 348
||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct: 361 cagtgcccttctttacagttcaagaggatcagaagtctatggtggagggtctgagatttg 302
Query: 349 gtgagagactttctactgtaccatctcctgtgtagaacagtagggcaaaagagatatgag 408
||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 301 gtgagagactttctactgtaccatctcctgtgtag-----------aaaagagatatgag 253
Query: 409 aggagagagacaaacacgtatcaagatagaaacagggccacaaacacatatatagacatg 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 aggagagagacaaacacgtatcaagatagaaacagggccacaaacacatatatagacatg 193
Query: 469 gatacaga 476
||||||||
Sbjct: 192 gatacaga 185
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 476
Length of database: 876
Length adjustment: 10
Effective length of query: 466
Effective length of database: 866
Effective search space: 403556
Effective search space used: 403556
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no492_l05.g1 MSMg01no492_l05.g1 CHROMAT_FILE:
MSMg01no492_l05.g1 PHD_FILE: MSMg01no492_l05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:17:00 2005
(492 letters)
>mm_chr1_90247507_90248398
Length = 892
Score = 920 bits (476), Expect = 0.0
Identities = 488/492 (99%)
Strand = Plus / Plus
Query: 1 cataagcatttatcaacaccctctgcattaaagggccccactgactatgtgtgtctaaag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cataagcatttatcaacaccctctgcattaaagggccccactgactatgtgtgtctaaag 260
Query: 61 aaacacccatgtagtgaggcttacatttggacagctttctctatgcttctgtctgcctgg 120
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaacacccatgtagtgaggcttatatttggacagctttctctatgcttctgtctgcctgg 320
Query: 121 atcctcgtgcccaatctgttcagtttttgactggggctaggcaggccacatctcatgtct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atcctcgtgcccaatctgttcagtttttgactggggctaggcaggccacatctcatgtct 380
Query: 181 gccagctgagcccagctctccctaccctgatgatacagagttgttcaccgagtgttacag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gccagctgagcccagctctccctaccctgatgatacagagttgttcaccgagtgttacag 440
Query: 241 catttatgaagacttggcagaacagctactggtctactcctgcgaagcctggggtgggag 300
|| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 caatgatgaagacttggcagaacagctactggtctactcctgcgaagcctggggtgggag 500
Query: 301 caactgtctggagctggcagtggaggctacagatcagcatttcatcgctcagcctggggt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 caactgtctggagctggcagtggaggctacagatcagcatttcatcgctcagcctggggt 560
Query: 361 ccaggtaagaaaaagccaggacctgaaaaatgtacccaggaatgggctatcagtagcatt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ccaggtaagaaaaagccaggacctgaaaaatgtacccaggaatgggctatcagtagcatt 620
Query: 421 aataaaatgacattaaaagtccgcatttcccaacccgtgtaaaaaacattgagggagtac 480
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aagaaaatgacattaaaagtccgcatttcccaacccgtgtaaaaaacattgagggagtac 680
Query: 481 ctgggtgaaagt 492
||||||||||||
Sbjct: 681 ctgggtgaaagt 692
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 492
Length of database: 892
Length adjustment: 10
Effective length of query: 482
Effective length of database: 882
Effective search space: 425124
Effective search space used: 425124
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
