NNNCCCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGATCCGCG
GAATTCTTTGTTTTTCTCTGAGCCCCATTTTTTAATGGGGTTATTTGATT
TTCTGGAGTTCACCTTCTTGAGTTCTTTATATATATTGGATATTAGCCCC
CTATCTGATTTAGGATAGGTACAGAAAATTTCCCAATCTGTTGGTGGCCT
TTTTGTCTTATTGACGGTGTCTTTTGCCTTGCAGAAGCTTTGCAATTTTA
TGAGGTCCCATTTATCGATTCTTGATCTTACAGCACAAACCATTGCTGTT
CTATTCAGGAATTTTTCCCCTGTACCCATATCTTCGAGGGTTTCCCCTAC
TTTCTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGGAGTTCCTTAA
TCCACTTAGATTTGACCTTAGTACAAGGAGATAGGAATGGATTAATTCGC
ATTCTTTTACATGATAACTGCCAGTTGTGCCAGCACCATTTGTTGAGGAT
AAACAGGTTGAGAAAGAAATTAGGGAAACAACACCCTTCTCAATAGTCAC
AAATAATATAAAATACCTTGGCGTGACTCTAACTAAGGAAATGAAAGATC
TGTATGATAAGAACTTCAAGTCTATGAAGAAAGAAATTAAAGAAGATCTC
AGAAGATGGAAATATCTCCCATGCTCATGGATTGGCAGGATCAATATAGT
AAAAATGGCTATCTTGCCAAAAGCAATCTACAGA

ACGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXACCCAGACTGTCATGCTGTCGAGATG
CAATTTAAAATCCTGCTTGCTCTGTTCAACACTGACCATGCATGCCTAGC
TCAGAGATGTATGTTTTTAGGTTCTACCTGAGGATGGAAGGCTCACGAGA
AAAGGCAAAACAGTACTACATATCGAGATGTCTGCTGACAGGATCCAGAA
ACTGCCGGAGCAAATCTCAGCAAAGGAGCAATGAGGACAGAGCCTTGAAA
GGCACTTACTGCCTTGATGATTTTTTTGAATGTGCCCTCTTGGCTCACAG
ACCTGCCTGCCTGCCTGCGGGGCAGAAGCTACTCCTTGTCCACAGGCCAG
GCAGAGTAGGTGCTCAGCTATACTCTTGAGTCTGCACAGCATTACACTCT
GGTGTCTACATGGTCCCTCTAGCTGCACTTTACAAGATGAGAGAGATTTA
AGGAGATTCTGGAGACTCAAAATTGCTCTCAGGGGATTAAGTGCTGCATA
TGTTCAGGTCACAGCAATATGGTGACCTAGGAGTCACCAAGATGTCCAGG
GAGGAGGGGGCAGCAGGAAATCCAATGGGAGCTGTCTGAATGCACGGCAC
TGCCCTCTACAGTGTGCATTAAGTACTTAAGCTATAACAGCCTCTGCTAA
ACCAAGTCAGTCTCTTGTCCTAGTTGGATN

Query= MSMg01no493_b13.g1 MSMg01no493_b13.g1 CHROMAT_FILE:
MSMg01no493_b13.g1 PHD_FILE: MSMg01no493_b13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:17:31 2005
         (645 letters)



>mm_chr1_43818881_43819925
          Length = 1045

 Score = 1195 bits (618), Expect = 0.0
 Identities = 638/650 (98%), Gaps = 10/650 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccagactgtcatgctgtcgagatgcaatttaaaatcctgcttgctctgttcaacactgac 60
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 201 ccagactgtcatgctgtcgagacgcaatttaaaatcctgcttgctctgttcaacactgac 260

                                                                       
Query: 61  catgcatgcctagctcagagatgtatgtttttaggttctacctgaggatggaaggctcac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 catgcatgcctagctcagagatgtatgtttttaggttctacctgaggatggaaggctcac 320

                                                                       
Query: 121 gagaaaaggcaaaacagtactacatatcgagatgtctgctgacaggatccagaaactgcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gagaaaaggcaaaacagtactacatatcgagatgtctgctgacaggatccagaaactgcc 380

                                                                       
Query: 181 ggagcaaatctcagcaaaggagcaatgaggacagagccttgaaaggcacttactgccttg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggagcaaatctcagcaaaggagcaatgaggacagagccttgaaaggcacttactgccttg 440

                                                                       
Query: 241 atgat-----ttttttgaatgtgccctcttggctcacagacctgcctgcctgcctgcggg 295
           |||||     |     ||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 441 atgatgagagt-----gaatgtgccctcttggctcacagacctgcctgcctgcctacggg 495

                                                                       
Query: 296 gcagaagctactccttgtccacaggccaggcagagtaggtgctcagctatactcttgagt 355
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 gcagaagctactccttgtccacaggccaggcagagtaggtgctcagctatactcttgagt 555

                                                                       
Query: 356 ctgcacagcattacactctggtgtctacatggtccctctagctgcactttacaagatgag 415
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 ctgcacagcattacactctggtgtctacatggtccctctagctgcactttacaagatgag 615

                                                                       
Query: 416 agagatttaaggagattctggagactcaaaattgctctcaggggattaagtgctgcatat 475
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 agagatttaaggagattctggagactcaaaattgctctcaggggattaagtgctgcatat 675

                                                                       
Query: 476 gttcaggtcacagcaatatggtgacctaggagtcaccaagatgtccagggaggagggggc 535
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 gttcaggtcacagcaatatggtgacctaggagtcaccaagatgtccagggaggagggggc 735

                                                                       
Query: 536 agcaggaaatccaatgggagctgtctgaatgcacggcactgccctctacagtgtgcatta 595
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 736 agcaggaaatccaatgggagctgtctgaatgcacggcactgccctctacagtgtgcatta 795

                                                             
Query: 596 agtacttaagctataacagcctctgctaaaccaagtcagtctcttgtcct 645
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 796 agtacttaagctataacagcctctgctaaaccaagtcagtctcttgtcct 845


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 645
Length of database: 1045
Length adjustment: 10
Effective length of query: 635
Effective length of database: 1035
Effective search space:   657225
Effective search space used:   657225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)