Query= MSMg01no493_d07.b1 MSMg01no493_d07.b1 CHROMAT_FILE:
MSMg01no493_d07.b1 PHD_FILE: MSMg01no493_d07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:17:39 2005
(620 letters)
>mm_chr1_80235918_80236941
Length = 1024
Score = 1156 bits (598), Expect = 0.0
Identities = 613/620 (98%), Gaps = 4/620 (0%)
Strand = Plus / Plus
Query: 5 gaattctcccgggtgagccattctgcagttgactgcagctctgtcctctctacggaagaa 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctcccgggtgagccattctgcagttgactgcagctctgtcctctctacggaagaa 264
Query: 65 aatcagacacacttaggaactcccttcgcattgcgctttctccccccactcttttccttc 124
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 265 aatcagacacacttaggaactccctttgcattgcgctttctccccccactcttttccttc 324
Query: 125 ctcttcagcaccaaacctgcaaggccattgccgcgtgcgctggaacgcacaatgcagtgt 184
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 325 ctcttcagcaccaaacctgcaaggccattgccgcgtgccctggaacgcacaatgcagtgt 384
Query: 185 ctcacaggtaggcggactgccactgccctagcggggagtcctgttgggttagacagaact 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ctcacaggtaggcggactgccactgccctagcggggagtcctgttgggttagacagaact 444
Query: 245 ccattctctctttatcacccttccctacggagtctggccagcagatcgcacctagccagg 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ccattctctctttatcacccttccctacggagtctggccagcagatcgcacctagccagg 504
Query: 305 acaagggacagctgcgaatggaatgatggatgctgagtccaaaaaaaaaaaaa----tta 360
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 505 acaagggacagctgcgaatggaatgatggatgctgagtccaaaaaaaaaaaaaaaaatta 564
Query: 361 tctaagaaaaagttcttagaggttttcagttctttccatctctctttcggatctgaccca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tctaagaaaaagttcttagaggttttcagttctttccatctctctttcggatctgaccca 624
Query: 421 aggaatgctggaggggctgaggcgctccggcagagctctgtggatctcattcacgagaga 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 aggaatgctggaggggctgaggcgctccggcagagctctgtggatctcattcacgagaga 684
Query: 481 ggatctccagtaaactgtgcacggaactgaagacaactgcctttattagctccttgtttc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 ggatctccagtaaactgtgcacggaactgaagacaactgcctttattagctccttgtttc 744
Query: 541 atgaggatacgcttcatcaaataaaagtcccagccgggcttagctggggtgatgactttc 600
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 atgaggatacgcttcatcgaataaaagtcccagccgggcttagctggggtgatgactttc 804
Query: 601 cttagtctggcatcacgtgg 620
||||||||||||||||||||
Sbjct: 805 cttagtctggcatcacgtgg 824
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 620
Length of database: 1024
Length adjustment: 10
Effective length of query: 610
Effective length of database: 1014
Effective search space: 618540
Effective search space used: 618540
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no493_d07.g1 MSMg01no493_d07.g1 CHROMAT_FILE:
MSMg01no493_d07.g1 PHD_FILE: MSMg01no493_d07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:17:39 2005
(667 letters)
>mm_chr1_80261798_80262864
Length = 1067
Score = 1282 bits (663), Expect = 0.0
Identities = 666/667 (99%)
Strand = Plus / Minus
Query: 1 ttcagttcttgcagctgtgttttagaaagtgattaagcaatatttttcaaacgtggatat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 867 ttcagttcttgcagctgtgttttagaaagtgattaagcaatatttttcaaacgtggatat 808
Query: 61 ttagctatccattgtcctctgaagagtccttttcatgttttcaaagatgtgctttgtgct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 807 ttagctatccattgtcctctgaagagtccttttcatgttttcaaagatgtgctttgtgct 748
Query: 121 gaagatttgtgtgtccgttcctctgtgcttccaactatcactgaagtcttctacctgatt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 747 gaagatttgtgtgtccgttcctctgtgcttccaactatcactgaagtcttctacctgatt 688
Query: 181 gatctgccaaggattatagtttgctttaacttcagagtatttttatcttccattttattt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 687 gatctgccaaggattatagtttgctttaacttcagagtatttttatcttccattttattt 628
Query: 241 aattttgttcctttttcttttcttacaagataatgttttagatatgtaattggggaaaac 300
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 627 aattttgttcctttttcttttctttcaagataatgttttagatatgtaattggggaaaac 568
Query: 301 cactagatttctgtcaaaaaaatgaaatgttactgaattcaagtaaccaactctccattg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 cactagatttctgtcaaaaaaatgaaatgttactgaattcaagtaaccaactctccattg 508
Query: 361 aatatcaatactgttgatatacttattagaatgtatgtctcagaagatggtttctgttaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 aatatcaatactgttgatatacttattagaatgtatgtctcagaagatggtttctgttaa 448
Query: 421 atatatgaagttacaattactgaattctaatatggattaaaagctccacataaatatttt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 atatatgaagttacaattactgaattctaatatggattaaaagctccacataaatatttt 388
Query: 481 ccccatgcgtcttggattataattttccttttagacttgcttttattgcatttaaatttg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 ccccatgcgtcttggattataattttccttttagacttgcttttattgcatttaaatttg 328
Query: 541 cttttatatgtactgttaattttaagtcttaggatcttaatctctacatgttctccacct 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 cttttatatgtactgttaattttaagtcttaggatcttaatctctacatgttctccacct 268
Query: 601 ttccatgagacagtaaaggtgtgggcagtacggacaggttctcggtgcaccttgctgtgc 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 ttccatgagacagtaaaggtgtgggcagtacggacaggttctcggtgcaccttgctgtgc 208
Query: 661 ttgcaca 667
|||||||
Sbjct: 207 ttgcaca 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 667
Length of database: 1067
Length adjustment: 10
Effective length of query: 657
Effective length of database: 1057
Effective search space: 694449
Effective search space used: 694449
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
