Query= MSMg01no493_d08.b1 MSMg01no493_d08.b1 CHROMAT_FILE:
MSMg01no493_d08.b1 PHD_FILE: MSMg01no493_d08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:17:39 2005
(661 letters)
>mm_chr1_16347855_16348915
Length = 1061
Score = 1203 bits (622), Expect = 0.0
Identities = 643/652 (98%), Gaps = 4/652 (0%)
Strand = Plus / Minus
Query: 4 ggaattcatcccaccagatcagccctgcactgagtgctcaagggaatcctatactggaaa 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 652 ggaattcatcccaccagatcagccctgcactgagtgctcaagggaatcctatactggaaa 593
Query: 64 tcaaagagtgggcaccttcctgtacagatgtagaactcagccatagagtatgaatagaaa 123
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 592 tcaaagagtgggcaccttcctgtacagatgtagaactcagccgtagagtatgaatagaaa 533
Query: 124 ggagaagagaaccaaagatgcagacttcaacagttcagag----aagtaccacagctcaa 179
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 532 ggagaagagaaccaaagatgcagacttcaacagttcagagaagtaagtaccacagctcaa 473
Query: 180 aggtgagcctgagaaacagaaatgggcatcaccatcagagaaattaagatattaatagaa 239
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 aggtgagcctgagaatcagaaatgggcatcaccatcagagaaattaagatattaatagaa 413
Query: 240 gtatgcttgtccttaccagtgatcatatttaacatacacaaaaagaagactaccattaaa 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 gtatgcttgtccttaccagtgatcatatttaacatacacaaaaagaagactaccattaaa 353
Query: 300 ttcgtcttagactatcccaaaatgttgaagcaggggagatatccttccaaactagttcat 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 ttcgtcttagactatcccaaaatgttgaagcaggggagatatccttccaaactagttcat 293
Query: 360 gaagctagcattatcttaataacaaactaaagaacacaacaagcaaaaacagtataccaa 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 gaagctagcattatcttaataacaaactaaagaacacaacaagcaaaaacagtataccaa 233
Query: 420 tatcccaacatatatgtagaaattatcaacatattgattgattgaattcaagagcacaca 479
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 232 tatcccaacatatatgtagaaattgtcaacatattgattgattgaattcaagagcacaca 173
Query: 480 agaaaaagagaagagccgtgattaagtagaattcatccaaagatggaaaagtggttcaat 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 172 agaaaaagagaagagccgtgattaagtagaattcatccaaagatggaaaagtggttcaat 113
Query: 540 gtatgcaaatcaagaaatatgttaatattgtgacagaaagttgtatagtcatcttattaa 599
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 112 gtatgcaaatcaagaaatatgttaatattgtgatggaaagttgtatagtcatcttattaa 53
Query: 600 aaccagaaaatataataaaaatgaacattatgataataactttgaaaaattg 651
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52 aaccagaaaatataataaaaatgaacattatgataataactttgaaaaattg 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 661
Length of database: 1061
Length adjustment: 10
Effective length of query: 651
Effective length of database: 1051
Effective search space: 684201
Effective search space used: 684201
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no493_d08.g1 MSMg01no493_d08.g1 CHROMAT_FILE:
MSMg01no493_d08.g1 PHD_FILE: MSMg01no493_d08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:17:39 2005
(659 letters)
>mm_chr1_16174622_16175680
Length = 1059
Score = 1162 bits (601), Expect = 0.0
Identities = 648/669 (96%), Gaps = 10/669 (1%)
Strand = Plus / Plus
Query: 1 accatgtcagtgcacagggctggctgggccccaaggacactggatagcacacgcttgtaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 191 accatgtcagtgcacagggctggctgggccccaaggacactggatagcacacgcttgtaa 250
Query: 61 catggagacagtggaaaggagaccaagccaaggcaaggctctgttattgggagctcaact 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 catggagacagtggaaaggagaccaagccaaggcaaggctctgttattgggagctcaact 310
Query: 121 tgagccagatgacttaagacaaaaggtaccagtactggccagaggtggcccagctactgt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 tgagccagatgacttaagacaaaaggtaccagtactggccagaggtggcccagctactgt 370
Query: 181 ttatgtggagaagaggaacagcaagcttaggattctattttgggtgatgggctaagactt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 ttatgtggagaagaggaacagcaagcttaggattctattttgggtgatgggctaagactt 430
Query: 241 ggtagttgcccattggtcatgggcatttgtacatgaacattccaactttgtacttggtgg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 ggtagttgcccattggtcatgggcatttgtacatgaacattccaactttgtacttggtgg 490
Query: 301 gctaaggatagccagccccatccattcaggcatcactgtctcacagaaatgccttggcct 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 gctaaggatagccagccccatccattcaggcatcactgtctcacagaaatgccttggcct 550
Query: 361 atgatggggctgtaggtgcttggtcttctgggagagcacagggttggatagggtgtgcac 420
|||||||||||||||||| ||||||||||||||||||||||||| ||||||| |||||
Sbjct: 551 atgatggggctgtaggtgattggtcttctgggagagcacagggtcagatagggcgtgcat 610
Query: 421 acacacg------cgc----gcgcacacacacacactctctccaggcaataggccaagtt 470
|||||| ||| |||| |||||||||||||||||||||||||||||||||||
Sbjct: 611 gcacacgggcgtgcgctcacgcgcgcacacacacactctctccaggcaataggccaagtt 670
Query: 471 taccctctattatggtcttggacaacacagttctcaagcatgtccacatgtgaagctgag 530
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 671 taccctctcttatggtcttggacaacacagttctcaagcatgtccacatgtgaagctgag 730
Query: 531 cagagtctgactcaaagactgagacagaactgacagatataatatgaatatagagatgcc 590
|||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct: 731 cagagtctgactcaaagattgagacagaaccgacagatataatatgaatatagagatgcc 790
Query: 591 aaacttttccctcatctttttagtcatctatcagtaaaatcgacgctgctttacattcaa 650
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 791 aaacttttccctcatctttttagtcatctatcagtaaagtcgacgctgctttacattcaa 850
Query: 651 gtctctatg 659
|||||||||
Sbjct: 851 gtctctatg 859
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 659
Length of database: 1059
Length adjustment: 10
Effective length of query: 649
Effective length of database: 1049
Effective search space: 680801
Effective search space used: 680801
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
