BAC Information

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BAC

Clone NameMSMg01-493L08
Chromosome1 (Build37)
Map Location 159,225,672 - 159,379,460
singlet/doubletdoublet
Overlap geneRasal2, Gabarapl2-ps1_1522.1, 2810025M15Rik
Upstream geneTdrd5, Nphs2, 9430070O13Rik, LOC100038991, Soat1, LOC100039026, Abl2, Tor3a, C530043G21Rik, LOC433368, Ralgps2, Angptl1, 4930439D14Rik, 1700057K13Rik
Downstream geneBC026585, Lztr2, LOC664935, LOC100039217, 6430517E21Rik, Astn1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-493L08.T7 (MSMg01no493_l08.b1)MSMg01-493L08.TJ (MSMg01no493_l08.g1)
ACCAG571162AG571163
length751757
length of high quality
(start - end)		631 (44 - 674)604 (75 - 678)
definitionCHROMAT_FILE: MSMg01no493_l08.b1 PHD_FILE: MSMg01no493_l08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:18:21 2005CHROMAT_FILE: MSMg01no493_l08.g1 PHD_FILE: MSMg01no493_l08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:18:21 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(159,225,672 - 159,226,305)(159,379,024 - 159,379,460)
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCACTTAAACTTTCCTTTGTAGTTACAATAATAATTTTTAAAACATAGT
GAAATAAAATTCATATAAAATCTAGCACTTAAAAGTGAATAGTTTAATGG
TATTTGGTACATCCAGAACATTATAAAACTACTACTCTGTCTAGTTTGAA
ATAGTGATGATTTTATATTTATCTTAAATACCACAATGGGGCTGCTCCTT
TGTGATTACATCACTGTGTGTTAGATGTTCAGTAATACAGGATACTACAT
TGTGGTACATGATTTAGCTTTAGAAAAAAAAATGCTTTCATGTCCTAAGT
AGGATTATATGATAGTATAAATTCTTAAGTGTTCAAAGAATCAGGAGATA
CTTTCAGAAGTGGGGCCCACTGAGGGGCCTTTACACTAGTGGGAAGCATG
CCCAAAAGGGCAACAGTGGCGAGGTTCACTGACTCCATCTTCTTGTGTTG
CTTCTCAGCCTGAAGGTAACCAGTTCTGCTTTGTTAGACATTGTGGCCAC
GATGTACTGCCTCATTACTCACCCAGATGCAATGGGTGCACTGGAGGAGA
ACCTCCAAATGAGACCCACTGACCGCAGAGGGGAACCTACAGAACTGTGA
GCCAGAGTAACCCTTTTCTCCTGAAAGCTTAGCACCTCAAGTGTCTGTTG
TATAAATAGAAAGTGGACTAACACACTAAACAAAGGGGAAAGGATGGNAG
A

AATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTTTTTCCTATTACAGCTTCTGATTCA
GAGCCCTGCTTCCTACCTTGGTCTCACCACCTGTGACTTCTCACTCTCCT
CAGCCTTAAATACACACAACATTCCTGGCCCCAGCTTTCACATGACCACC
ATTTAGAGTTTTTTTTTTTGTTTTTGTTTTTGTTTTTATTTTTTTAAAAA
AGCACTTAGCATCTGGTTTTGTTTTTTGGTTTTTGTTTGTTTGTTTGTTT
GTTTTTTGGTTTTTGAGACTGTTTTTCTCTTGGCTGTCCTGGAACTCACT
CTGTAGACCAGGCTAGCCTCGAACTCAGAAATCTGCTTGCCTCTGCCTCC
CAAGTGCTGGGATTAAAGGCGTTCGCCACCATTGTCCAGCTTAGCATCTG
GTTTTATGACATTCTAAGATCTCTTCACCCTGAATAAAGCATGAAGAACT
TCAGGATAGACATGCAGACTTCTCAGGTTCTGCCTTCTGAGTGCCTGGCT
CAGTGCCTGGGACCTGGCAGACGCTAAACTTAGAGGTGTTTGGCAAGTTC
TCCAGAGTCAAGCAATTGGAGGGTGCAGCTAATTTGGTTTTCTCTGACTC
TCAGCCTCAGCCCGGGAACACAGCAAGGTTACAAGAACTTTATTCTTAAC
ACTTAGTCAATCAAGGGGCAAGATGTCCGGGAGGATTTCCTTTTCCACAA
ACACTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no493_l08.b1 MSMg01no493_l08.b1 CHROMAT_FILE:
MSMg01no493_l08.b1 PHD_FILE: MSMg01no493_l08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:18:21 2005
         (631 letters)



>mm_chr1_159225475_159226505
          Length = 1031

 Score = 1133 bits (586), Expect = 0.0
 Identities = 619/634 (97%), Gaps = 7/634 (1%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcacttaaactttcctttgtagttacaataataatttttaaaacatagtgaaataa 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 198 gaattcacttaaactttcctttgtagttacaataataatttttaaaacatagtgaaataa 257

                                                                       
Query: 65  aattcatataaaatctagcacttaaaagtgaatagtttaatggtatttggtacatccaga 124
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 258 aattcatataaaatctagcacttaaaagtgaatagtttaatggcatttggtacatccaga 317

                                                                       
Query: 125 acattataaaactactactctgtctagtttgaaatagtgatgattttatatttatcttaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 acattataaaactactactctgtctagtttgaaatagtgatgattttatatttatcttaa 377

                                                                       
Query: 185 ataccacaatggggctgctcctttgtgattacatcactgtgtgttagatgttcagtaata 244
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 ataccacaatggggctgcttctttgtgattacatcactgtgtgttagatgttcagtaata 437

                                                                       
Query: 245 caggatactacattgtggtacatgatttagctttagaaaaaaaaatgctttcatgtccta 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 caggatactacattgtggtacatgatttagctttagaaaaaaaaatgctttcatgtccta 497

                                                                       
Query: 305 agtaggattatatgatagtataaattcttaagtgttcaaagaatcaggagata------- 357
           |||||||||||||||||||||||||||||||||||||||||||||||||||||       
Sbjct: 498 agtaggattatatgatagtataaattcttaagtgttcaaagaatcaggagatagcggata 557

                                                                       
Query: 358 ctttcagaagtggggcccactgaggggcctttacactagtgggaagcatgcccaaaaggg 417
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 ctttcagaagtggggcccactgaggggcctttacactagtgggaagcatgcccaaaaggg 617

                                                                       
Query: 418 caacagtggcgaggttcactgactccatcttcttgtgttgcttctcagcctgaaggtaac 477
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 caacagtggcgaggttcactgactccatcttcttgtgttgcttctcagcctgaaggtaac 677

                                                                       
Query: 478 cagttctgctttgttagacattgtggccacgatgtactgcctcattactcacccagatgc 537
           ||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct: 678 cagttctgctttgttagacattgtggccatgatatactgcctcattactcacccagatgc 737

                                                                       
Query: 538 aatgggtgcactggaggagaacctccaaatgagacccactgaccgcagaggggaacctac 597
           |||||||||| |||||| ||||||||||||||||||||||||||| ||||||||||||| 
Sbjct: 738 aatgggtgcattggaggggaacctccaaatgagacccactgaccgaagaggggaacctat 797

                                             
Query: 598 agaactgtgagccagagtaacccttttctcctga 631
           ||||||||||||||||||||||||||||||||||
Sbjct: 798 agaactgtgagccagagtaacccttttctcctga 831


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 631
Length of database: 1031
Length adjustment: 10
Effective length of query: 621
Effective length of database: 1021
Effective search space:   634041
Effective search space used:   634041
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no493_l08.g1 MSMg01no493_l08.g1 CHROMAT_FILE:
MSMg01no493_l08.g1 PHD_FILE: MSMg01no493_l08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:18:21 2005
         (604 letters)



>mm_chr1_159378457_159379460
          Length = 1004

 Score =  797 bits (412), Expect = 0.0
 Identities = 432/440 (98%), Gaps = 4/440 (0%)
 Strand = Plus / Minus

                                                                        
Query: 166  tttttt-aaaaaagcacttagcatctggttttgttttttggtttttgtttgtttgtttgt 224
            |||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 1004 ttttttaaaaaaagcacttagcatctggttttgttttttggtttttgtttgtgtgtttgt 945

                                                                        
Query: 225  ttgttttttggtttttgagactgtttttctcttggctgtcctggaactcactctgtagac 284
               ||||||||||||||||||||  |||||||||||||||||||||||||||||||||||
Sbjct: 944  ---ttttttggtttttgagactgggtttctcttggctgtcctggaactcactctgtagac 888

                                                                        
Query: 285  caggctagcctcgaactcagaaatctgcttgcctctgcctcccaagtgctgggattaaag 344
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 887  caggctagcctcgaactcagaaatctgcttgcctctgcctcccaagtgctgggattaaag 828

                                                                        
Query: 345  gcgttcgccaccattgtccagcttagcatctggttttatgacattctaagatctcttcac 404
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 827  gcgttcgccaccattgtccagcttagcatctggttttatgacattctaagatctcttcac 768

                                                                        
Query: 405  cctgaataaagcatgaagaacttcaggatagacatgcagacttctcaggttctgccttct 464
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 767  cctgaataaagcatgaagaacttcaggatagacatgcagacttctcaggttctgccttct 708

                                                                        
Query: 465  gagtgcctggctcagtgcctgggacctggcagacgctaaacttagaggtgtttggcaagt 524
            ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 707  gagtgcctgactcagtgcctgggacctggcagacgctaaacttagaggtgtttggcaagt 648

                                                                        
Query: 525  tctccagagtcaagcaattggagggtgcagctaatttggttttctctgactctcagcctc 584
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 647  tctccagagtcaagcaattggagggtgcagctaatttggttttctctgactctcagcctc 588

                                
Query: 585  agcccgggaacacagcaagg 604
            ||||||||||||||||||||
Sbjct: 587  agcccgggaacacagcaagg 568


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 604
Length of database: 1004
Length adjustment: 10
Effective length of query: 594
Effective length of database: 994
Effective search space:   590436
Effective search space used:   590436
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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