Query= MSMg01no493_m22.b1 MSMg01no493_m22.b1 CHROMAT_FILE:
MSMg01no493_m22.b1 PHD_FILE: MSMg01no493_m22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:18:29 2005
(673 letters)
>mm_chr1_96548846_96549916
Length = 1071
Score = 1243 bits (643), Expect = 0.0
Identities = 662/669 (98%), Gaps = 2/669 (0%)
Strand = Plus / Plus
Query: 5 gaattctaccctacttacatatctttcatggaggtctctgtcatttttttttttatgtta 64
|||||||||||||| || |||||||||||||||||||||||||||||||||| ||||||
Sbjct: 205 gaattctaccctacatagatatctttcatggaggtctctgtcattttttttt--atgtta 262
Query: 65 cctgtgcatatcagatttgtaatctttggtttgtgtccacttatttgtgcccagtttctg 124
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 263 cctgtgcatatcagatttgtaatctttggtttgcgtccacttatttgtgcccagtttctg 322
Query: 125 taaattctcctctcttcctccaataacaaaacacttttgcatgttacttatttctaggct 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 taaattctcctctcttcctccaataacaaaacacttttgcatgttacttatttctaggct 382
Query: 185 tatggtgataattgcatttgtcctttcacatcttagacagacctgttcgcattgggttgg 244
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 383 tatggtgataattgcatttgtcctttcacatcttagacagacctgttcgcattcggttgg 442
Query: 245 gacctccttttttatacctgggtcatggacagtaaattaactcttttcctgagggtgtaa 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 gacctccttttttatacctgggtcatggacagtaaattaactcttttcctgagggtgtaa 502
Query: 305 atttcagattgaagacactctagctttacatgtattctactatactgccaattaattatt 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 atttcagattgaagacactctagctttacatgtattctactatactgccaattaattatt 562
Query: 365 ttaaagttaggttaagagaaactaggctttcttattttttaatatactcttctgttgggc 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 ttaaagttaggttaagagaaactaggctttcttattttttaatatactcttctgttgggc 622
Query: 425 tagcattccccttcaaaggtagaacagaaagttagtcaaattatgaagaaattgggtctc 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 tagcattccccttcaaaggtagaacagaaagttagtcaaattatgaagaaattgggtctc 682
Query: 485 atgagtacaagaaattacagcaaacagacagcccacagaatgtaagaaagtctttgctgt 544
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 683 atgagtacaagaaattacagcaaacagacagcccacagaatgtaagaaagtctttgctat 742
Query: 545 ctactcaactaaaagagaatcagtatccagatacataacaaataaaatttaaaataccct 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 ctactcaactaaaagagaatcagtatccagatacataacaaataaaatttaaaataccct 802
Query: 605 aaatattaaaataagtaaacaattaaaattttaaagtggcctatagaactgaacatagaa 664
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 803 aaatattaaaataagtaaacaattaaaattttaaagtggcctatagaactgaacatagaa 862
Query: 665 ttttcaaaa 673
|||||||||
Sbjct: 863 ttttcaaaa 871
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 673
Length of database: 1071
Length adjustment: 10
Effective length of query: 663
Effective length of database: 1061
Effective search space: 703443
Effective search space used: 703443
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no493_m22.g1 MSMg01no493_m22.g1 CHROMAT_FILE:
MSMg01no493_m22.g1 PHD_FILE: MSMg01no493_m22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:18:29 2005
(600 letters)
>mm_chr1_96688467_96689467
Length = 1001
Score = 839 bits (434), Expect = 0.0
Identities = 551/590 (93%), Gaps = 3/590 (0%)
Strand = Plus / Minus
Query: 13 aaaaaaaaattacaaggccagacacacagtagaaaa-agaaaccaggaactccaaatggg 71
|||||||||||||||||||||||| | | || |||| ||||| ||||||||| |||||||
Sbjct: 801 aaaaaaaaattacaaggccagacagagaata-aaaacagaaatcaggaactcaaaatggg 743
Query: 72 caaagaaagggttagctgtccctagaaattatgactgaga-cccatggggcattggtatt 130
|||||||||||||||||||||||||||||||||||||||| |||| ||||||||| |||
Sbjct: 742 caaagaaagggttagctgtccctagaaattatgactgagaccccacagggcattggaatt 683
Query: 131 caagcaggtacagtttcaaccaattaattctctctgttctctatgcttatcattccaaac 190
||||||||||||||||| | ||||||||||||||||||||||||||||||||||| ||||
Sbjct: 682 caagcaggtacagtttccatcaattaattctctctgttctctatgcttatcattctaaac 623
Query: 191 aatcagatctccctcagcataattaagacaaagaagtagcctggtaacatttaaatctct 250
|||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct: 622 aatcagatctccctcagcataattaagacaaagaagcagcctagtaacatttaaatctct 563
Query: 251 tatgttaatcaaaagttatttttcactgcccctatgagaataccaaatagctaagtttag 310
|||||||| |||||||||||||| | |||||||||||||||||||||||| ||| ||| |
Sbjct: 562 tatgttaaccaaaagttattttttaatgcccctatgagaataccaaatagttaaatttgg 503
Query: 311 aactgtagcctgaccccccacccattccacacccaccccaaatctataaaagtgctaaca 370
|| ||| |||||| ||||||| ||| ||||||||||||||||||||||| || |||||||
Sbjct: 502 aattgttgcctgaacccccactcatcccacacccaccccaaatctataatagcgctaaca 443
Query: 371 agctgggtatgtacaaatccctgagcagctttgaagaagttattttattcatctaccttt 430
||||| ||||||||||| ||||||||||||||||||||||||||||| |||||| ||||
Sbjct: 442 agctgagtatgtacaaacccctgagcagctttgaagaagttattttactcatctgccttc 383
Query: 431 ttatccttacaactaaaatgagccacccatctcccttgcctagacgatcccttgtctggt 490
||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||
Sbjct: 382 ttatccttacaactaaaatgagccatccatctcccttgcctagatgatcccttgtctggt 323
Query: 491 ctataaacatggattggatatgccaagacctctgcaaggaactgtgactaggtgaactat 550
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 322 ctataaacatggattggatatgccaagacctctgcaaggaactgtggctaggtgaactat 263
Query: 551 tgatgacaaagtaaaaggaggcctgctttcatttttatggcgtttttcac 600
||| |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 262 tgacgacaaagtaaaaggaggcctgctttcatttttatggcgcttttcac 213
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 600
Length of database: 1001
Length adjustment: 10
Effective length of query: 590
Effective length of database: 991
Effective search space: 584690
Effective search space used: 584690
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
