BAC Information

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BAC

Clone NameMSMg01-493O05
Chromosome1 (Build37)
Map Location 151,684,131 - 151,684,343
singlet/doubletsinglet
Overlap genePla2g4a
Upstream geneLOC100042792, LOC435647, LOC100042813
Downstream genePtgs2, LOC676712, LOC100043257, LOC100043261, Pdc, BC003331, Tpr, EG625534
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-493O05.T7 (MSMg01no493_o05.b1)MSMg01-493O05.TJ (MSMg01no493_o05.g1)
ACCAG571299AG571300
length744844
length of high quality
(start - end)
487 (44 - 530)223 (72 - 294)
definitionCHROMAT_FILE: MSMg01no493_o05.b1 PHD_FILE: MSMg01no493_o05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:18:35 2005CHROMAT_FILE: MSMg01no493_o05.g1 PHD_FILE: MSMg01no493_o05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:18:35 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCGCGGAAT
TCTTTGTTCTTCCCTGAGCCCCATCTTTTAAGGGGTTTATTTGATTTTCT
GGAGTCCACCCTCTTGAGTTCTTTATATATATTGGATATTAGTCCCCTAT
CTGACTTAAGATAGGTAAAGATCCTTTCCCAATATGTTGGTGGTCTTTTT
GTCTTATTGACAGTGTCTTTTGCCTTGCAGAAGCTTTGCAGTTTCATGAG
GTCCCATTTGTCAATCCTTGATCTTACAGCACAAGCCATTGCTGTTCTAT
TCAGGAATTTTTTCCCTTGCCCATATCTTCAAGACTTTTCCCCACTTTCT
CCTCTATAAGTTTCAGTGTCTCTGGATTTATGTGAAGTTCCTTGATCCAC
TTAGATTTGACCTTAGTACAAGGACAGAGGAATTGGTCGATTCGCATTCT
TCTACATGTTAACAACCAGTTGTGCCAGCACCATTTGTTGAAAATGCTGT
CTTTCTTCCACTGGATGGTTTTAGCTCCCTTGTCGAAGATCAAGTGACCA
TAGGTGTGTGGGTTCATCTCTGGGTCTTCAATTCTATTCCATTGGTCTAC
TTGGCTGTCACTATACCAGTACCATGCAGGTTTTTATAAAATTTGCTCTT
GTCAAAAAGCTTTAAGGTCAGGCATTGGTGATTCCACCAGGAGGTACTTT
TATTCCTTGGAAAAGAGCTTTTTGCTTTTCCTTAGGTTTTTTGT
GCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXAATGTACTGTGCTGCATCATAAGCTCAGC
AAAACTTGAATAATTTTTAAGCATCACCACTTACCAATAATTTTTGTGAT
AAAACGTGTTTTTCTTGGATAAAGGCAATGCAAGAGGTCACCAAGAAGAT
ATCAGTAAAAATAGAATAAGACACACACACACAGAGAGAGAGAGAGAGAG
AGAGAGAGAGAGAGAGAGAGAGAGAGGGAGGGAGAGGGGGAGGGTTNNTT
TTTNTTTTTTTTTTTTTTTTTTTTTTNNNNNNTTTTTTTTTTTTTTTTTT
TTTNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNTTTTTTTTT
TTTTTTTTTTTTTTCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTTT
TTTTTTTNTTTTTTTTTTTTTCTTTTTTTTNTTNTTNTTTTTTTNTTTTT
TTTTCTNNCTTTTTTTTTTNTNTTTATTTTTTTTTTTTTTTTTTTNTTTT
TTTTNTTTTCTTTTTTTTTCTTTCTTTCTTCTTCTCCTCCTTTCCTCTTT
TCCTTTTTTCTTTTTTTCCCCCCCTTTTTCTCTCTCTCTTTTTTCCCCCC
CCCGTTTGTTTTCTTTTTTTTTTTTTTTTGTTGTCGGGGTCGGCGCCCCC
GCTGTGCCGTATCTTTTCTTTTCCTCTCCTCTTTTCTGTCGCCGCCTTCC
CTGTCTCTCTTCGTCTATTTTTTCGAGTGTTTGGTTGTGTTGTTTATCNT
CTTTCTTTATTTATCTTTGACTTATCTCCTTGTAGGCATATCGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no493_o05.g1 MSMg01no493_o05.g1 CHROMAT_FILE:
MSMg01no493_o05.g1 PHD_FILE: MSMg01no493_o05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:18:35 2005
         (223 letters)



>mm_chr1_151683931_151684553
          Length = 623

 Score =  377 bits (195), Expect = e-109
 Identities = 211/221 (95%), Gaps = 8/221 (3%)
 Strand = Plus / Plus

                                                                       
Query: 1   aatgtactgtgctgcatcataagctcagcaaaacttgaataatttttaagcatcaccact 60
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 201 aatgtactgtgctgcatcataagctcagcaaaacttgaataatttttaggcatcaccact 260

                                                                       
Query: 61  taccaataatttttgtgataaaacgtgtttttcttggataaaggcaatgcaagaggtcac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taccaataatttttgtgataaaacgtgtttttcttggataaaggcaatgcaagaggtcac 320

                                                                       
Query: 121 caagaagatatcagtaaaaatagaataagacacacacacacagagagagagagagagaga 180
           ||||||||||||||||||||||||||||||||||        ||||||||||||||||||
Sbjct: 321 caagaagatatcagtaaaaatagaataagacaca--------gagagagagagagagaga 372

                                                    
Query: 181 gagagagagagagagagagagagagggagggagagggggag 221
           ||||||||||||||||||||||||||||||| |||||||||
Sbjct: 373 gagagagagagagagagagagagagggagggggagggggag 413


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 83
Number of extensions: 18
Number of successful extensions: 18
Number of sequences better than 10.0: 1
Number of HSP's gapped: 9
Number of HSP's successfully gapped: 1
Length of query: 223
Length of database: 623
Length adjustment: 9
Effective length of query: 214
Effective length of database: 614
Effective search space:   131396
Effective search space used:   131396
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)