BAC Information

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BAC

Clone NameMSMg01-494B02
Chromosome1 (Build37)
Map Location 107,071,491 - 107,071,873
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC383546, LOC100041134, Cdh20
Downstream geneRnf152, LOC100041985, Pign, LOC666249, 2310035C23Rik, LOC100042023, Tnfrsf11a, EG635504, Zcchc2, EG435634, Phlpp
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-494B02.T7 (MSMg01no494_b02.b1)MSMg01-494B02.TJ (MSMg01no494_b02.g1)
ACCAG571435AG571436
length716740
length of high quality
(start - end)
146 (39 - 184)639 (66 - 704)
definitionCHROMAT_FILE: MSMg01no494_b02.b1 PHD_FILE: MSMg01no494_b02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:18:49 2005CHROMAT_FILE: MSMg01no494_b02.g1 PHD_FILE: MSMg01no494_b02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:18:49 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTC
ACCTGAGGATACCGAACGGCTGAGAAGCACCTGAAAAAATGCTCAGCATC
CTTAATCATCAGAGAAATGCAAATCAAAACAACCCTGAGATTCCATCTGA
CACCAGTCAGAATGGGCTAAGATCTAAAAATTCTAGGTGGACTAGCAGNA
ATGGCCCNNTGGNNGNNNNNNGAGGATGTGGAGTAAAGAAGGAACGCTCC
TCCATTGGTTGTGTGATTGCCAGCTTGTACAATCACTCTGGGAATCATTC
TGGCAGTTCCTCAAAAAATTGGACCTAATACTACCGGAAGGATCCCGCAA
AACCTCTTCCGGGGGAAATATGCCAAAAAAGGGTCTCAATTGGGAAAAAA
GGGAAACCGGGGCCCCCCCAAGGGTTCAAAAAACCCCCTTTTTTTTTTAA
AAAACCCCCCCAAAAACCTTTAAAAAGAAAACCCCCCCAGGGGGCCCCCC
TCTCCCCGGGGGGGGGGGGGGGGTTTCCCCAAAAAGGGGGGGGGGGAGAT
TTTTTTTTTTCCGGGGGGGGGGGGGGACCCCCCTCCCCCTCCTTAATTTT
TAAAAAAAAAAAAAAGGGGGGGTTTTTTTATAATAAAAATTTCCTCCCCC
CCCCCCCTTGGGGGGGGGGGGGTGGGGTNNNNCTCTTGGTGTGGGGGGGT
TTTTTTTCTTTTTTTT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXCATGCATGCTATTGAGCCTAAAACGTGGGCTGTGA
AATGTAGAAACTGGGTAGTTGAGTTGCAGCTACAGAGAAACAATCGGAAG
CTCCACATTCACACTGCAGCTGAAAACAGCAGCAGCTAAAGCATGCAGGC
AGCGCAGGAAAGGAAGAATCTGGAACCCATAAAACGCTAGAAGCTGGGTA
GGGCTGGAGACATAGCTCAGTGGTGAAGTACGTCTTTGCCCTTACTCAGG
ATCTGGGCTCAGTTCTTAGCACCCATGGCAGGTGGCTTACAACTTCTGTA
ACTCCAGCTCTAGAGATCCAACACTTTCCTCTTCCTTCTGGCCTCCTTGG
GCACTTGCACTAAAGTGCACCCCATATATCTCTATGTCTGTCTGTCTGTC
TGTCTGTCTATCTGTCTATCTATCTATCTATCTATCTATCTATCTATCTA
TCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATGAAAAATGT
TTAAAATGATAAAGAAAAATAGACAGCAGCTTCTTTTGAAGCCAGAGTGT
GGGATTGTGGAACCCTGTGTTGTATCTTCCTCTCTCCCCTGTTTGGCTGC
TGCTTANCAGTTGTTGAAATACATGAGGCTCTGGTTTGCATGTCCAGGAA
TTCTAAATTTGTAAACACGTTTATGTCCTTTCCCATGTAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no494_b02.g1 MSMg01no494_b02.g1 CHROMAT_FILE:
MSMg01no494_b02.g1 PHD_FILE: MSMg01no494_b02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:18:49 2005
         (639 letters)



>mm_chr1_107071491_107072528
          Length = 1038

 Score =  675 bits (349), Expect = 0.0
 Identities = 376/385 (97%), Gaps = 2/385 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   catgcatgctattgagcctaaaacgtgggctgtgaaatgtagaaactgggtagttgagtt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 catgcatgctattgagcctaaaacgtgggctgtgaaatgtagaaactgggtagttgagtt 324

                                                                       
Query: 61  gcagctacagagaaacaatcggaagctccacattcacactgcagctgaaaacagcagcag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 gcagctacagagaaacaatcggaagctccacattcacactgcagctgaaaacagcagcag 264

                                                                       
Query: 121 ctaaagcatgcaggcagcgcaggaaaggaagaatctggaacccataaaacgctagaagct 180
           || ||||| |||||||||||||| ||||||||||||||| |||||| |||||||||||||
Sbjct: 263 ct-aagcacgcaggcagcgcagggaaggaagaatctggatcccatacaacgctagaagct 205

                                                                       
Query: 181 gggtagggctggagacatagctcagtggtgaagtacgtctttgcccttactcaggatctg 240
           |||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 204 gggtggggctggagacatagctcag-ggtgaagtacgtctttgcccttactcaggatctg 146

                                                                       
Query: 241 ggctcagttcttagcacccatggcaggtggcttacaacttctgtaactccagctctagag 300
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||
Sbjct: 145 ggctcagttcttagcacccatggcaggtggcttacaacttctgtcactccagctcgagag 86

                                                                       
Query: 301 atccaacactttcctcttccttctggcctccttgggcacttgcactaaagtgcaccccat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 85  atccaacactttcctcttccttctggcctccttgggcacttgcactaaagtgcaccccat 26

                                    
Query: 361 atatctctatgtctgtctgtctgtc 385
           |||||||||||||||||||||||||
Sbjct: 25  atatctctatgtctgtctgtctgtc 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 639
Length of database: 1038
Length adjustment: 10
Effective length of query: 629
Effective length of database: 1028
Effective search space:   646612
Effective search space used:   646612
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)