Query= MSMg01no494_k02.b1 MSMg01no494_k02.b1 CHROMAT_FILE:
MSMg01no494_k02.b1 PHD_FILE: MSMg01no494_k02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:19:30 2005
(585 letters)
>mm_chr1_93557361_93558348
Length = 988
Score = 1029 bits (532), Expect = 0.0
Identities = 570/584 (97%), Gaps = 3/584 (0%)
Strand = Plus / Minus
Query: 5 gaattcattaattttcaggtttcccgtgtgtgtgtttgttttctgagactttcctgacct 64
|||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 755 gaattcattaatcctgaggtttcccgtgtgtgtgtttgttttctgagactttcctgacct 696
Query: 65 ggttgtgtgtgtgtaggaaacgctactgagctttctgcttgctgtttagtatgatgcatc 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 695 ggttgtgtgtgtgtaggaaacgctactgagctttctgcttgctgtttagtatgatgcatc 636
Query: 125 ctgttgacatggagaagacatcataagaagccctgcttcttggctctttggaaacttcag 184
|||||||||||||||||| | || ||||||||||||||||||||||||||||||||||||
Sbjct: 635 ctgttgacatggagaagatagcagaagaagccctgcttcttggctctttggaaacttcag 576
Query: 185 ctgggatgggagcatctagtaggtggcccaagggttggctcctggaagccgtctgtga-- 242
|||||||||||||||||| |||||||| ||||||||||||||||| |||| |||||||
Sbjct: 575 ctgggatgggagcatctaataggtggcacaagggttggctcctgggagccatctgtgatc 516
Query: 243 -tcttcaacactcatctcagggcagtgctgcctgaggctagacctgtttggtatagtgga 301
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 515 ttcttcaacactcatctcagggcagtgcttcctgaggctagacctgtttggtatagtgga 456
Query: 302 acaaagaaatcactgtgggcatctctggagagacctggagactgcaggacaatacacacc 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 acaaagaaatcactgtgggcatctctggagagacctggagactgcaggacaatacacacc 396
Query: 362 cttctcccacccatggtctcacagctgagagctagacaggaatagcccagacttttacat 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 cttctcccacccatggtctcacagctgagagctagacaggaatagcccagacttttacat 336
Query: 422 gccagaaatcaaaatgtcaggggatatgcatttgatgggtcgatagaagtttctgaaaat 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 gccagaaatcaaaatgtcaggggatatgcatttgatgggtcgatagaagtttctgaaaat 276
Query: 482 attgatccacttgatagactcttcattcaaacctctcattaacatatgtaaatctggcct 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 attgatccacttgatagactcttcattcaaacctctcattaacatatgtaaatctggcct 216
Query: 542 ggtgagccccttcagcagttaagagcactggctgctctttcaga 585
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 ggtgagccccttcagcagttaagagcactggctgctctttcaga 172
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 585
Length of database: 988
Length adjustment: 10
Effective length of query: 575
Effective length of database: 978
Effective search space: 562350
Effective search space used: 562350
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no494_k02.g1 MSMg01no494_k02.g1 CHROMAT_FILE:
MSMg01no494_k02.g1 PHD_FILE: MSMg01no494_k02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:19:31 2005
(587 letters)
>mm_chr1_93384894_93385880
Length = 987
Score = 1091 bits (564), Expect = 0.0
Identities = 582/588 (98%), Gaps = 2/588 (0%)
Strand = Plus / Plus
Query: 1 caggacagccagggctacacagagaaaccctgtctcaaaaaaacaaaaacaaaaaacaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caggacagccagggctacacagagaaaccctgtctcaaaaaaacaaaaacaaaaaacaaa 260
Query: 61 aaactaaaaaatcccaaacaaccaaaaaaa-aaaaacaaaaacaaaacaaacaaacaaaa 119
|||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||
Sbjct: 261 aaactaaaaaatcccaaacaaccaaaaaaacaaaaacaaaa-caaaacaaacaaacaaaa 319
Query: 120 aaagatgtgcaaacttggcaagacattctagaacggctggcagaagaggtgacctctggg 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 aaagatgtgcaaacttggcaagacattctagaacggctggcagaagaggtgacctctggg 379
Query: 180 ccttcttcagtattctgaagtaggtcacaaacacagcattcagaatctctgtgtgcagtt 239
||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct: 380 ccttcttcagtattctgaagtaggtcacaaacacagcattcggagtctctgtgtgcagtt 439
Query: 240 tcagctttctctcagtgctctctgaagcttcagcctcccaaagttcccattcagtttctt 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 tcagctttctctcagtgctctctgaagcttcagcctcccaaagttcccattcagtttctt 499
Query: 300 ttctgctttctcccactttctttgcattcttgatagagtttttctcttttccttgaaagc 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 ttctgctttctcccactttctttgcattcttgatagagtttttctcttttccttgaaagc 559
Query: 360 catgaacctttttggtttgttaatgtcctctgtatcttttttcatttctacttccttgct 419
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 560 catgaacctttttggtttgttaatgtcttctgtatcttttttcatttctacttccttgct 619
Query: 420 ctgcagccataaacatgtttttaacatctctggactaacttcataacttctgccctttcc 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 620 ctgcagccataaacatgtttttaacatctctggactaacttcataacttctgcccttccc 679
Query: 480 aaaaccagagatcactttaattataccaagagaagcttggcctaatttgtcttgtttaaa 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 aaaaccagagatcactttaattataccaagagaagcttggcctaatttgtcttgtttaaa 739
Query: 540 gagtttctttactgcttcgcaacacatttcagatactggttttgacct 587
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 gagtttctttactgcttcgcaacacatttcagatactggttttgacct 787
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 587
Length of database: 987
Length adjustment: 10
Effective length of query: 577
Effective length of database: 977
Effective search space: 563729
Effective search space used: 563729
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
