BAC Information

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BAC

Clone NameMSMg01-495D24
Chromosome1 (Build37)
Map Location 189,037,864 - 189,038,484
singlet/doubletsinglet
Overlap geneSpata17
Upstream geneTgfb2, Rrp15, LOC666832, LOC100042375, D1Pas1
Downstream geneGpatch2, Esrrg, 9330162B11Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-495D24.T7 (MSMg01no495_d24.b1)MSMg01-495D24.TJ (MSMg01no495_d24.g1)
ACCAG572338AG572339
length756763
length of high quality
(start - end)
585 (47 - 631)622 (78 - 699)
definitionCHROMAT_FILE: MSMg01no495_d24.b1 PHD_FILE: MSMg01no495_d24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:20:17 2005CHROMAT_FILE: MSMg01no495_d24.g1 PHD_FILE: MSMg01no495_d24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:20:17 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTTTGTTTATTTCTATGACCCATTTTTAATGGGGTTATGTGATTT
TTCTGGAGTCCACCTTGTTGAGTTCTTTATATATATTGGATATTAGTCTC
CTATCTGATTTAGGATTGATAAAAAATCTTTTCCCAATCTGTTGGTGCCC
TTTTTGTCTTATTAACAGTGTCTTTTGCCTTACAGAAGCTCTGCAATTTT
ATGAGGTCCCCTTTGTCTCTCCTTGATCTTATAGCACAAGCCATTGCTTT
TCTGTTCAGGAATTTTTCCCCTGTGCCCATATCTTTGAGACTTTTCCCCA
CTTTTCCTCTATACGTTTTACTCTCACTGGTTTTATGTGGAGTTCCTTGA
TCCACTTAGACTTGAGCTTTGTACAAGGAGATAAGAGTGGATCAATTTGC
ATTCTTTTTCATGATAACCGCCAGTTGAGCCAGGACCATTTGTCTTTTAT
CCACTGGATGATTTTAGATCCCTTGTCAAAGATCAAGTGACCATCGGTGT
GGGTTGATTTCTGGGTCTTCAATTCTATTCTATTGATCTACCTGTCTGTC
ACTATATCAGTACCATACAGNTTTTTTGTTGTTGTTGTTGTTTTTTTTTT
TTTAATCACAATTGCTCTGTAGTACAGCTTGAGGTCAGGCATGGTGATTC
CATCAGATGTTCTTTTATTGTTGAGAATAGTTTTTGCTATCCTAGGTTTT
TTATTA
NCCCATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAATTCATCTGTGATTCATTTGTCCAA
GTGAAGTTTCTATACCATTGTGACAAGATAATTGGTACAGTAAATGGGCA
AGAGCTAAGGCAGCATTCTCACCCCCCACACCTAAACTTCCTCTCCATGA
AAAGGGGACATTGAAACTAGAACCAATGGCCCAGTGGTTTTCAAAACTTA
GAAGGAATCACAAAAAGTACATTACAAAAAGTGTGATAAATTATAGCAGA
CCAGCGGTGACCATGTCAGTGTGAGAAAGTCCTGATAAGCTATTCTTATC
CTAACATACATCTCAACTATGGTTTTGCTATTTCATCGTGAACCTCTAGC
AACTACAGTGATAATTCAATCTTGTAACTTTTGTGAGAAACTATGGATTT
TCTTTCTAGAAGTAGGCCAATGTTGCTTTTTTTTCTTGCCTCTTAGTTTA
ACCATTATTTCAGCCTGTACTGTCTTGCTTCCTGAAATGGAATAGCTACA
ACAGTTATTTAGTGAATAATCACATTACCGAAGCTTCCAATTAATCATCT
TTAAATAAGCATAGCCATTGCGCAATGGAATTCTTATACTTAACGTTCAG
AGATCATATAGTATTCATTTAGAGTTATGTGGCAGGCTCCTGCTTGTTCA
TGACCTCAGTGTGCAGTGGGGACAAGTTGACTCCTTCATGCTATTGTGGA
GCAGACATTGAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no495_d24.g1 MSMg01no495_d24.g1 CHROMAT_FILE:
MSMg01no495_d24.g1 PHD_FILE: MSMg01no495_d24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:20:17 2005
         (622 letters)



>mm_chr1_189037664_189038684
          Length = 1021

 Score = 1149 bits (594), Expect = 0.0
 Identities = 615/622 (98%), Gaps = 1/622 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcatctgtgattcatttgtccaagtgaagtttctataccattgtgacaagataattggta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 821 tcatctgtgattcatttgtccaagtgaagtttctataccattgtgacaagataattggta 762

                                                                       
Query: 61  cagtaaatgggcaagagctaaggcagcattctcaccccccacacctaaacttcctctcca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 761 cagtaaatgggcaagagctaaggcagcattctcaccccccacacctaaacttcctctcca 702

                                                                       
Query: 121 tgaaaaggggacattgaaactagaaccaatggcccagtggttttcaaaacttagaaggaa 180
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 701 tgaaaaggggacattgaaactagaagcaatggcccagtggttttcaaaacttagaaggaa 642

                                                                       
Query: 181 tcacaaaaagtacattacaaaaagtgtgataaattatagcagaccagcggtgaccatgtc 240
           |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||
Sbjct: 641 tcacaaaaagtacattacaaaaagtgtgataaattatagcagaccagcagtgaccaagtc 582

                                                                       
Query: 241 agtgtgagaaagtcctgataagctattcttatcctaacatacatctcaactatggttttg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 581 agtgtgagaaagtcctgataagctattcttatcctaacatacatctcaactatagttttg 522

                                                                       
Query: 301 ctatttcatcgtgaacctctagcaactacagtgataattcaatcttgtaacttttgtgag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 ctatttcatcgtgaacctctagcaactacagtgataattcaatcttgtaacttttgtgag 462

                                                                       
Query: 361 aaactatggattttctttctagaagtaggccaatgttgcttttttttcttgcctcttagt 420
           ||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 461 aaactatggattttcttgctagaagtaggccaatgttgc-tttttttcttgcctcttagt 403

                                                                       
Query: 421 ttaaccattatttcagcctgtactgtcttgcttcctgaaatggaatagctacaacagtta 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 ttaaccattatttcagcctgtactgtcttgcttcctgaaatggaatagctacaacagtta 343

                                                                       
Query: 481 tttagtgaataatcacattaccgaagcttccaattaatcatctttaaataagcatagcca 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 tttagtgaataatcacattaccgaagcttccaattaatcatctttaaataagcatagcca 283

                                                                       
Query: 541 ttgcgcaatggaattcttatacttaacgttcagagatcatatagtattcatttagagtta 600
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 282 ttgcgcaatggaattcttatacttaacattcagagatcatatagtattcatttagagtta 223

                                 
Query: 601 tgtggcaggctcctgcttgttc 622
           ||||||||||||||||||||||
Sbjct: 222 tgtggcaggctcctgcttgttc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 622
Length of database: 1021
Length adjustment: 10
Effective length of query: 612
Effective length of database: 1011
Effective search space:   618732
Effective search space used:   618732
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)