BAC Information

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BAC

Clone NameMSMg01-495H16
Chromosome1 (Build37)
Map Location 142,137,263 - 142,137,842
singlet/doubletsinglet
Overlap genenone
Upstream geneCrb1, Zbtb41, Aspm, F13b, Cfhr1, EG624286, EG214403, BC026782, LOC545399, EG545367, Cfh
Downstream geneKcnt2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-495H16.T7 (MSMg01no495_h16.b1)MSMg01-495H16.TJ (MSMg01no495_h16.g1)
ACCAG572514
length781765
length of high quality
(start - end)
---690 (76 - 765)
definitionCHROMAT_FILE: MSMg01no495_h16.b1 PHD_FILE: MSMg01no495_h16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:20:34 2005CHROMAT_FILE: MSMg01no495_h16.g1 PHD_FILE: MSMg01no495_h16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:20:34 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
NCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCATTCTGCTGGAAGAACCAAAGGAC
ACCTGTTCTCTACTTATTTAGTTGGATTCTGTGGCACTTGGTTTGAACAA
AAATAGAATCTATAGCAATAGCACAAAACTTGCTCTATATTCTAAGCATG
CCTGTCTATAAGAGAAGAATCACTTCATATGTCAGCAACCCTGAAAGAGA
AAAACCAAAGACAAAACACCATGTCTGCTTCTCAGATTCCATCTAAACAT
GACAGGTCAGTAATAGGAAGAGAGATTGTCTTAATATTTATTAAGATTTT
ATAGTAGCTAATATAACTTTTCCAACATGTTTTCTAGTGATTCCTCGCAG
TAATTGTTAGTGAGGCAAAATATGAATGGAAACTTCCAATTGAAGCCTGT
CAGGAGAAAACTATACTTGGTATCTGTTTGTGGTTCCTGACACAAAGCTC
CCAAAACCCTTGCAGTCTTTGGAATGACAAGGGCTTATTTATATACTTAT
TAGGTAAGGGTTATATCAATCTAGGTAGCTTCAGAATTGGAATTGGAATT
GGGTGGCAAAATAACCAAAAAAAATTTAGAGGTTTGACACAACCTCACTC
CAATCTGCAAATGCCATGGAGAAAACAGTCTCAATATCAAGTGGAAAAGC
ATTATGCAATGCCATAATCAATCATACTCACATAATAAACCCTCAGTAAA
TAATTTGTAGATAGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no495_h16.g1 MSMg01no495_h16.g1 CHROMAT_FILE:
MSMg01no495_h16.g1 PHD_FILE: MSMg01no495_h16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:20:34 2005
         (690 letters)



>mm_chr1_142137263_142138352
          Length = 1090

 Score = 1091 bits (564), Expect = 0.0
 Identities = 576/580 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cattctgctggaagaaccaaaggacacctgttctctacttatttagttggattctgtggc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 580 cattctgctggaagaaccaaaggacacctgttctctacttatttagttggattctgtggc 521

                                                                       
Query: 61  acttggtttgaacaaaaatagaatctatagcaatagcacaaaacttgctctatattctaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 acttggtttgaacaaaaatagaatctatagcaatagcacaaaacttgctctatattctaa 461

                                                                       
Query: 121 gcatgcctgtctataagagaagaatcacttcatatgtcagcaaccctgaaagagaaaaac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 gcatgcctgtctataagagaagaatcacttcatatgtcagcaaccctgaaagagaaaaac 401

                                                                       
Query: 181 caaagacaaaacaccatgtctgcttctcagattccatctaaacatgacaggtcagtaata 240
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 caaagacaaaacaccacgtctgcttctcagattccatctaaacatgacaggtcagtaata 341

                                                                       
Query: 241 ggaagagagattgtcttaatatttattaagattttatagtagctaatataacttttccaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 ggaagagagattgtcttaatatttattaagattttatagtagctaatataacttttccaa 281

                                                                       
Query: 301 catgttttctagtgattcctcgcagtaattgttagtgaggcaaaatatgaatggaaactt 360
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 280 catgttttctagtgattccttgcagtaattgttagtgaggcaaaatatgaatggaaactt 221

                                                                       
Query: 361 ccaattgaagcctgtcaggagaaaactatacttggtatctgtttgtggttcctgacacaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 220 ccaattgaagcctgtcaggagaaaactatacttggtatctgtttgtggttcctgacacaa 161

                                                                       
Query: 421 agctcccaaaacccttgcagtctttggaatgacaagggcttatttatatacttattaggt 480
           |||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 160 agctcctaaaacccttgcagtctttggaatgacaagggcttattaatatacttattaggt 101

                                                                       
Query: 481 aagggttatatcaatctaggtagcttcagaattggaattggaattgggtggcaaaataac 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 100 aagggttatatcaatctaggtagcttcagaattggaattggaattgggtggcaaaataac 41

                                                   
Query: 541 caaaaaaaatttagaggtttgacacaacctcactccaatc 580
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 40  caaaaaaaatttagaggtttgacacaacctcactccaatc 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 690
Length of database: 1090
Length adjustment: 10
Effective length of query: 680
Effective length of database: 1080
Effective search space:   734400
Effective search space used:   734400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)