BAC Information

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BAC

Clone NameMSMg01-495I05
Chromosome1 (Build37)
Map Location 118,332,544 - 118,332,942
singlet/doubletsinglet
Overlap geneCntnap5a
Upstream genenone
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-495I05.T7 (MSMg01no495_i05.b1)MSMg01-495I05.TJ (MSMg01no495_i05.g1)
ACCAG572539AG572540
length695728
length of high quality
(start - end)
299 (334 - 632)402 (327 - 728)
definitionCHROMAT_FILE: MSMg01no495_i05.b1 PHD_FILE: MSMg01no495_i05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:20:36 2005CHROMAT_FILE: MSMg01no495_i05.g1 PHD_FILE: MSMg01no495_i05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:20:36 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGCCCTGTNNGGGTTCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXTT
TCGAGATCCGCGGAATTCCTGATCTTTACAAAAAATTATCATGAATGGGT
GTTGGATCTTGTCAAATGCTTTTTCTGCATCTAACGAGATGATCATGTGG
TTTTTGTCTTTGAGTTTGTTTATATAATGGATTACATTGATGGATTTTCG
TATATTAAACCATCCCTGCATCCCTGGAATAAAACCTACTTGGTCAGGAT
GGATGATTGCTTTAATGTGTTCTTGGATTCGGTTAGCGAGAATTTTATTG
AGGATTTTTGCATCGATATTCATTTTTTTTTTGGTCTGAAGTTCTCTATC
TTTGTTGGGTCTTTCTGTGGTTTAGGTATCAGAGTAATAGTGGCTTCATA
AAATGAGTTGGGTAGAGTACCTTCTACTTCTATTTTGTGAAATAGTTTGT
GCAGAATTGGAATTAGATCTTCTTTGAAGGTCTGGTAGAACTCTGCTCTA
AACCCATCTGGTCCTGGGCTTTTTTTGGTTGGGAGACTATTAATAACTGC
TTCTATTTCTTTAGGTGATATGGGACTGTTTAGATGGTCAACTTGATCCT
GATTCAACTTTGGTACCTGGTATCTGTCCAGAAATTTGTCCATTTCGTCC
AGGTTTTCCAGTTTTGTTGAGCATAGCCTTTTGTAGAAGGATCTG
GGAGACGATCAGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXTCCAAAAATACGTAAAACATTGCTTGAATTCTTCAG
AGACATGGTCTAGTGATAAGCCAATATCTCCTTTGATTCTTGTATTTCAC
AAACACTGTCTGATACAATATTACTGGAAATCCCTGAAGAACCCAGACCT
CAGATCGGGAAGGAAACAATTTTGTCTTATTTGACCTAAAATTCTCGACT
TTTTTGATAACAGCAAGGAAAGGAAATTGTTGAAGGAGTAGAGAAACTGT
GTTGATCCCATGTCTAGTCACTTCNTATCCTTGTCCCTGTGGATGGCTGT
ATACCCTTCATACTCATTGTGACGATTAATCTAAATAATCAGTCACCAGT
ACAGTGAGATTTAATTATCACCAATTTTAACTTTTATGCTGCTCTGAATT
TTTTAATTGCTTACCTCCAAATTATCATCTTGGTAATATTTTTAGTAAGA
CACATGAACTATCAGATAGAAACCCATTGTCACTTTGGCATGATCTAATG
TATCCATGCTGACAAATGGGCATGTTCATGAAAGGTTTCAAGATTAGGTT
AGCAGAGTTTAGAAGATCTTCTCTAAATATAGGCTATATCGTTTCTTAGG
GTTTGGGATATCTTCAGCTAAATAAAAAACAGAAAATAGACTGAGTACCA
GCATTCACTTCTCTCTATGTCCTGATTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no495_i05.g1 MSMg01no495_i05.g1 CHROMAT_FILE:
MSMg01no495_i05.g1 PHD_FILE: MSMg01no495_i05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:20:36 2005
         (402 letters)



>mm_chr1_118332544_118333345
          Length = 802

 Score =  712 bits (368), Expect = 0.0
 Identities = 392/400 (98%), Gaps = 2/400 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   atccttgtccctgtggatggctgtatacccttcatactcattgtgacgattaatctaaat 60
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 atccttgttcctgtggatggctgtatacccttcatactcattgtgacgattaatctaaat 340

                                                                       
Query: 61  aatcagtcaccagtacagtgagatttaattatcaccaattttaacttttatgctgctctg 120
           |||||||||||||||||||||||||||||||| |  ||||||||||||||||||||||||
Sbjct: 339 aatcagtcaccagtacagtgagatttaattattagtaattttaacttttatgctgctctg 280

                                                                       
Query: 121 aattttttaat-tgcttacctccaaattatcatcttggtaatatttttagtaagacacat 179
           ||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 aattttttaatat-cttacctccaaattatcatcttggtaatatttttagtaagacacat 221

                                                                       
Query: 180 gaactatcagatagaaacccattgtcactttggcatgatctaatgtatccatgctgacaa 239
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 220 gaactatcagatagaaacccattgtcactttggcatgatctaatgtctccatgctgacaa 161

                                                                       
Query: 240 atgggcatgttcatgaaaggtttcaagattaggttagcagagtttagaagatcttctcta 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 160 atgggcatgttcatgaaaggtttcaagattaggttagcagagtttagaagatcttctcta 101

                                                                       
Query: 300 aatataggctatatcgtttcttagggtttgggatatcttcagctaaataaaaaacagaaa 359
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 100 aatataggctatttcgtttcttagggtttgggatatcttcagctaaataaaaaacagaaa 41

                                                   
Query: 360 atagactgagtaccagcattcacttctctctatgtcctga 399
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 40  atagactgagtaccagcattcacttctctctatgtcctga 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 402
Length of database: 802
Length adjustment: 9
Effective length of query: 393
Effective length of database: 793
Effective search space:   311649
Effective search space used:   311649
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)