BAC Information

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BAC

Clone NameMSMg01-495K06
Chromosome1 (Build37)
Map Location 67,715,267 - 67,715,496
singlet/doubletsinglet
Overlap genenone
Upstream geneRpe, 1110028C15Rik, Acadl, Myl1, LOC100043192, Lancl1, Cps1, Kif22-ps
Downstream geneErbb4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-495K06.T7 (MSMg01no495_k06.b1)MSMg01-495K06.TJ (MSMg01no495_k06.g1)
ACCAG572636AG572637
length851735
length of high quality
(start - end)
---230 (84 - 313)
definitionCHROMAT_FILE: MSMg01no495_k06.b1 PHD_FILE: MSMg01no495_k06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:20:45 2005CHROMAT_FILE: MSMg01no495_k06.g1 PHD_FILE: MSMg01no495_k06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:20:45 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GACACCACGGNNNNNNNNNNNGGAGAGGGNNCCCCCACCCAAAATCGCGG
CCGCGAAACGACCCACAAATCAGCATCAGCCCCGNGGNAANNNCNNNTTA
ACCGCACCCAGCCCNGAGNNNNNNNGGAGGGNNNANNGGNNNNANNNNNC
NNAAAANGTATAAAGCAAAAAAAAAAAAGGGCCAAAACGGGACANNCCAN
AAACCACAACCCCTCCTGGGGGGGGGGGCCGGAATCCCCCACGCAAAAAA
ACAGATATTTATTCCAAGCAGCCAAAAGGCGGGGAACACCCGAGAGCAGA
TAAAGGGATTGCTATTACTCCACCCCCAGACCACGGATTGATCCGGCCAA
TCCCCAACGCCCACCCACCCCTCTTTTTTTTTCCACCACACGGGGGGGGC
CCGGGCACAAATCTTTATCCCCCACCACGGCGCCCGCCCACCCCAAAAAC
GCCCCGGCCGCCCCCACCCCCCCAAGAACCCCCCCCCCCCCCCCACTTCC
CCCAACCCCACCCCCCCGCCCGCGTACCCCCCCCACGCCCCCCCCCCGCT
AAACAAACTCACAAGACCCCCCCACACAAAAAAAGCCGCCCTTAATAAAC
CCAATAAACAAAAAAACGCCTCCGTCCCCCGCCCAACCAAGCTCCGGCTT
ATGCCGCCGCAATACCACCCCCCTTTCCCCCCCCTATCCCCCCGCCCCCT
CCCGTCACTACGTTATCCCCGCGCCCCCCACCTCATAGTACATATAATCG
CCATAAACCCGCCCCCCCCTATCAAACCGATATTCCCCCCCCCACACTCG
CCCCCCCTTTAGGTCCCCCCTCGCCATACACCTATCCCCGCCCCCCCCCC
G
NNCCCCCGATGCAGGGGAGGGCGGGNGGNNGCCCCCATGGNTCTTTGCNG
CGANNNACCCCGTTTTCGTACTTCGCGGACNNGGAGAGGAGANGCTTCAA
TGAAAGGAGAGAAATTTTTTCCGGGAACTGCAGTAGATTTCTAACAGTAA
GAAGGACCAGCTGTGGCTATTAGATTGAACAATATGGGAGATATTCATGA
GAAGAATATTTTATGTGGGCTAACTTGGTTCAGAACCCAACTATAGTTTT
TTCTAAAAAATGGGTGAAAGACATTAGAGGTGTCAAGTTTATACAAACCA
ATCAAGAACAATGTATTTTTTTTTTTCTCAGNNGANAACACCAAGGCCGC
CAAAACCAGAACTTATTTATAAAATTTAATATCATATTGAACTCATACAC
AAAGTTCACCAAAATATTATCTCCCAGAGTAACACATCAGTAATTGAGGA
TATGGCTTATCTATTAAGAGCATTTGCTCCTCTTTCAGAGTACTTAAGTT
TGGTTTATAGCACCCATGTTGGACAGCTCACACTCTTCTGTAACTCAAGA
TCCAAGAAATCTGATACCCTCATTGGCCTCTATGGGTGTCTGCATACATA
CATACATATATACATACATACATACACCCACACAGGCACATATATGCACA
TATATTAAGATAAATAATTTTTAAAGGAATAAAATAACCTGACAATCTGT
TAAAGATTTGTTCAGTACGTATGGGTTTCCAAAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no495_k06.g1 MSMg01no495_k06.g1 CHROMAT_FILE:
MSMg01no495_k06.g1 PHD_FILE: MSMg01no495_k06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:20:45 2005
         (230 letters)



>mm_chr1_67715067_67715696
          Length = 630

 Score =  362 bits (187), Expect = e-104
 Identities = 219/234 (93%), Gaps = 8/234 (3%)
 Strand = Plus / Plus

                                                                       
Query: 1   gagaggagangcttcaatgaaaggagagaaat----tttttccgggaactgcagtagatt 56
           ||||||||| ||||||||||||||||||||||    | |    |||||||||||||||||
Sbjct: 201 gagaggagatgcttcaatgaaaggagagaaataacctct----gggaactgcagtagatt 256

                                                                       
Query: 57  tctaacagtaagaaggaccagctgtggctattagattgaacaatatgggagatattcatg 116
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 tctaacagtaagaaggacaagctgtggctattagattgaacaatatgggagatattcatg 316

                                                                       
Query: 117 agaagaatattttatgtgggctaacttggttcagaacccaactatagttttttctaaaaa 176
           ||||||||||||||||||||||||||||||||| ||||||||||||||  |||| |||||
Sbjct: 317 agaagaatattttatgtgggctaacttggttcaaaacccaactatagtaatttcaaaaaa 376

                                                                 
Query: 177 atgggtgaaagacattagaggtgtcaagtttatacaaaccaatcaagaacaatg 230
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 atgggtgaaagacattagaggtgtcaagtttatacaaaccaatcaagaacaatg 430


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 230
Length of database: 630
Length adjustment: 9
Effective length of query: 221
Effective length of database: 621
Effective search space:   137241
Effective search space used:   137241
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)