BAC Information

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BAC

Clone NameMSMg01-495O12
Chromosome1 (Build37)
Map Location 87,869,112 - 87,869,322
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040213, LOC100039794, EG665338, Sp110, Sp140, Sp100, A630001G21Rik, Cab39, Itm2c, 4933407L21Rik, Gpr55
Downstream geneSpata3, 2810459M11Rik, Psmd1, Htr2b, Armc9, B3gnt7, EG383538, Ncl, Snord82, Nmur1, 1700019O17Rik, LOC100040414, Ptma, Pde6d, Cops7b, Nppc, 4930429A22Rik, EG620213
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-495O12.T7 (MSMg01no495_o12.b1)MSMg01-495O12.TJ (MSMg01no495_o12.g1)
ACCAG572839AG572840
length741742
length of high quality
(start - end)
227 (411 - 637)230 (84 - 313)
definitionCHROMAT_FILE: MSMg01no495_o12.b1 PHD_FILE: MSMg01no495_o12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:21:04 2005CHROMAT_FILE: MSMg01no495_o12.g1 PHD_FILE: MSMg01no495_o12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:21:04 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCCTCTATAATTTGGGCCGCAAACGAACCCCATAGGTCGTGGGCCGCGGA
ANCCAGCGTTCAGCATCAGAGCGGNAACNNCACAACANACCNAGGGAGCA
GCCTGGCCTTCATTACTCTTGAAGTTTTGTGGTCTGACATCCATATTGTT
GCTGTTCTCTCTGGGCTTTGAGGCAGTCCCGAATCCTGAACCTGTGTGTA
GGGTGCAGCCGTCAATATGATGTCTCTCCATTCCCCTCCCAGGTTTACCG
TGTCCACTGGCTTACCTTTCTCCCTGGACTGATGGGTTTGTGGGTCAGGT
TAGAGTCTTCTGATAGTTAGGAGCCTCTGTTGAGGAAAAGCCTTCATGAG
ATTTAGCTGTAAGGCATTTTCTCAATTAGTGATCAGTGTGGGAGGGCTCA
GCCCGTANCGGGTGGTGCCATTCCTAGGCTGGTATCCTGAGTTCTATAAG
AAAGCAGGCTGAGCAAGCCATGGAAAGCAATAATCAATGCATGTTGGTTT
GTTATCTTTAGCTAGAGATGGAACCTGAAGCACTGAATGTGTTAAGCACT
CAAAATACCTCTGAGCTAAACACACTTCAGGCCTTTATTGGTTTTTGTTA
GAACTGAAACCTCAAGCTGAGAGTTAGCTTTGACAAACCGGTTGTGTTTT
TTTTAACGAGCCAGTAAGCAGCATCCAGTCACGGCCTCTGGATCAGCTCC
TGCCTCCAGGTTCCCGCCCTGCTTGAGTTCCTGTCCTGACT
CCCCGATGACAGTGGGAGGCCNGGCGGNCGCCCGATACCTAACTGGGGGN
NGAACNANAGAATGACAAACAAAAGCTGTTGCNAGCTTGGCTAAATCTTG
TGCAGATAGCATGTGCACACATTCCTGCCTTATTTTGTTTATTTATTTTC
GCCCTGGGGTTTGAACCTAGGGCTTCGTACAAACCAAACCAGCACACTGA
CAATGTGCTATACTCCTAGCACCTTGTTTGTTTTTGAGACAAGATCTTGT
CCTCTAACTTAGGCTGGCTTCAAATTCATGATCTTCCTGTCTTCTTCTGA
ATGTTGGGGTTATTTGTTTTTACATTGTTCTACTGCCTCCTCCTGAGTGT
TGGGGTTGTAGGTGTTTGCAGCCTACACCCTCCTCAAGGCCTTTTATTAT
TGGATGTCATTTGTACACACGTGGATAGAATAAGAGAAAGCCATAGTGCT
GGGGCTGAGCACTTATGCATACAATATGGGTCTAGCCTAGAAATGACAAT
GAGTGTAACTGAAGCCTAGAGTAAGGGGGGTGAGCCCAGAGAGGAACAGA
TCACAGGAGCCTTGTAGTCTCGGTGAAGAGTCAATTTTACTGAATGAAAT
GGTAAGTCATTGGGTGGAGATGGAGGTTGAGCAGAGAGGTTACTTTGTTT
TGTAAACTGTTTATAAATGGTGCTACATTGTTTTTAATATTCCTGCTACT
GTTGCCATTCCTACCAGCTTCCGATTTCTAACCAGGCTGTAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no495_o12.b1 MSMg01no495_o12.b1 CHROMAT_FILE:
MSMg01no495_o12.b1 PHD_FILE: MSMg01no495_o12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:21:04 2005
         (227 letters)



>mm_chr1_87868842_87869468
          Length = 627

 Score =  408 bits (211), Expect = e-118
 Identities = 211/211 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   ggtggtgccattcctaggctggtatcctgagttctataagaaagcaggctgagcaagcca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 ggtggtgccattcctaggctggtatcctgagttctataagaaagcaggctgagcaagcca 422

                                                                       
Query: 61  tggaaagcaataatcaatgcatgttggtttgttatctttagctagagatggaacctgaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tggaaagcaataatcaatgcatgttggtttgttatctttagctagagatggaacctgaag 362

                                                                       
Query: 121 cactgaatgtgttaagcactcaaaatacctctgagctaaacacacttcaggcctttattg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 cactgaatgtgttaagcactcaaaatacctctgagctaaacacacttcaggcctttattg 302

                                          
Query: 181 gtttttgttagaactgaaacctcaagctgag 211
           |||||||||||||||||||||||||||||||
Sbjct: 301 gtttttgttagaactgaaacctcaagctgag 271


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 227
Length of database: 627
Length adjustment: 9
Effective length of query: 218
Effective length of database: 618
Effective search space:   134724
Effective search space used:   134724
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)