Query= MSMg01no496_a18.b1 MSMg01no496_a18.b1 CHROMAT_FILE:
MSMg01no496_a18.b1 PHD_FILE: MSMg01no496_a18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:21:15 2005
(584 letters)
>mm_chr1_128197134_128198119
Length = 986
Score = 1106 bits (572), Expect = 0.0
Identities = 582/586 (99%), Gaps = 2/586 (0%)
Strand = Plus / Plus
Query: 1 aacttgtttcagaaaaataaaatggacaacttctgaggagcatcagctaaaaatttccac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aacttgtttcagaaaaataaaatggacaacttctgaggagcatcagctaaaaatttccac 260
Query: 61 tagcatactgtatgcacacatatatgtattcactaccaacacacacacacaaacacacac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tagcatactgtatgcacacatatatgtattcactaccaacacacacacacaaacacacac 320
Query: 121 acatgcatgcaggagcatgcacacatacacttacatgtgaatgcatgtgtgcacgcactg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acatgcatgcaggagcatgcacacatacacttacatgtgaatgcatgtgtgcacgcactg 380
Query: 181 actggaggaaaagaaatgggtgagagagaaaaaatgagactggagaa--tttttttttgg 238
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 381 actggaggaaaagaaatgggtgagagagaaaaaatgagactggagaatttttttttttga 440
Query: 239 tcctgattcaagagattctcaatctgcggatgaagaaaattaggttcataagacttaaat 298
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 441 tcctgattcaagagattctcaatctgcagatgaagaaaattaggttcataagacttaaat 500
Query: 299 gaaagattcaaactaatcacatatttcctccaataaaatgttactaaagcctacagagtt 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gaaagattcaaactaatcacatatttcctccaataaaatgttactaaagcctacagagtt 560
Query: 359 ccaaaaactgtattgaacccaggctctaacaatttccacacctgtacttcccccttgcaa 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ccaaaaactgtattgaacccaggctctaacaatttccacacctgtacttcccccttgcaa 620
Query: 419 ctagctatgccttctagaaggctctgaggaaacataggtctcagtttttagaaattcaag 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctagctatgccttctagaaggctctgaggaaacataggtctcagtttttagaaattcaag 680
Query: 479 tggacgttttagactgacaaatcatgaacttggcaaatgttgcttacgttactcatgggt 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tggacgttttagactgacaaatcatgaacttggcaaatgttgcttacgttactcatgggt 740
Query: 539 gatgaaattaacagatcaataagtcaatcacctgttatctttctct 584
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gatgaaattaacagatcaataagtcaatcacctgttatctttctct 786
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 39
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 584
Length of database: 986
Length adjustment: 10
Effective length of query: 574
Effective length of database: 976
Effective search space: 560224
Effective search space used: 560224
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no496_a18.g1 MSMg01no496_a18.g1 CHROMAT_FILE:
MSMg01no496_a18.g1 PHD_FILE: MSMg01no496_a18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:21:15 2005
(648 letters)
>mm_chr1_128392625_128393672
Length = 1048
Score = 909 bits (470), Expect = 0.0
Identities = 515/530 (97%), Gaps = 2/530 (0%)
Strand = Plus / Minus
Query: 120 agttcaatggttatttatacttgattagtggaagagttaaatgtaggggtgggagatgat 179
||||||||||||||||||||||||||||||| |||||||| |||| ||||||||||||||
Sbjct: 1048 agttcaatggttatttatacttgattagtgggagagttaagtgtacgggtgggagatgat 989
Query: 180 tcctgtgggtacgagcactggctgcccttgctgaggatacaggtttgattctcagcatcc 239
|||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 988 tcctgtgggtactagcactgactgcccttgctgaggatacaggtttgattctcagcatcc 929
Query: 240 acactgtttttcacaactgtctccgagtccagttccagggcatccacgccctcttctggc 299
|||| || |||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 928 acacggtggctcacaactgtctccgagtccagttccagggcatctacgccctcttctggc 869
Query: 300 caccttaggtactggacatgtgggatatgctttaccaggagcagtgctttcaaagcagca 359
||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||
Sbjct: 868 caccttaggtactggacatgtgggatatgctttgccaggagcagtgctttcaacgcagca 809
Query: 360 ttcgaatctttaattctttaagattccatggtcatatggctcaaatcacattttcatttt 419
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 808 ttcgaatctttaattctttaagattccgtggtcatatggctcaaatcacattttcatttt 749
Query: 420 agga-tgatgctcactgcctgtttttacatttattgtcaggaggttgttcattgtgaagt 478
| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 748 a-gagtgatgctcactgcctgtttttacatttattgtcaggaggttgttcattgtgaagt 690
Query: 479 agtcttgatatttttcaaaccccgttacggcctcaattttgttgtcttcttttattcctt 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 689 agtcttgatatttttcaaaccccgttacggcctcaattttgttgtcttcttttattcctt 630
Query: 539 gcatattgatttcacttagtaaaatttatttaacgagatgtgtttgatcgatccggaatc 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 629 gcatattgatttcacttagtaaaatttatttaacgagatgtgtttgatcgatccggaatc 570
Query: 599 agtgctgtatgttctcccttattagactgagttctctttttttcctgtct 648
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 agtgctgtatgttctcccttattagactgagttctctttttttcctgtct 520
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 648
Length of database: 1048
Length adjustment: 10
Effective length of query: 638
Effective length of database: 1038
Effective search space: 662244
Effective search space used: 662244
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
