BAC Information

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BAC

Clone NameMSMg01-496A19
Chromosome1 (Build37)
Map Location 150,069,957 - 150,070,100
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneLOC100042792, LOC435647
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-496A19.T7 (MSMg01no496_a19.b1)MSMg01-496A19.TJ (MSMg01no496_a19.g1)
ACCAG572949AG572950
length754771
length of high quality
(start - end)
144 (274 - 417)637 (78 - 714)
definitionCHROMAT_FILE: MSMg01no496_a19.b1 PHD_FILE: MSMg01no496_a19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:21:15 2005CHROMAT_FILE: MSMg01no496_a19.g1 PHD_FILE: MSMg01no496_a19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:21:15 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTTATTTCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCAACTTGTAGACAGTTTGTCTATGCTACGACCATGCATAA
AATTTCTGAGAAACATTGGCTATTTCCAACAGGATTGTTAGCATAGTATG
TAGAAATTCATTATATTGTGTGGAATACTTATAGAGTATCAATTACTCCA
CGTTACCCAAGCTGAAGACTGAGACTGTGGTACCTAAACAACCTTCACTT
TTCACTGTAAGATGAAGCAGGCATTATTAATGCCAATTGATAGAAAAAAT
GACCACTAAATTTTTCTCCCTGAAAAATACTAGGGCGACTTCTTTATCAG
CTCTGTTTGTTATGCACATTTCCTTGATTGTTGATGTTAAAGGTAAATGT
CTTGACTCTATGATTCCACACATACAATTTACCAAATCTGCAGATCTTGA
AAAAGAATCACTTACTACCTCTAAGATTTTTGATTCTTCTATTAAGCATA
ATTAATAATACCGATGCTAAATGATTATGACGAAGATTAAAACCATGCTT
ATAAAAAACCATTTAGTATACTTCCCGGACCCCTGAAAACTTATAGTTTT
TTAATTGCTGGCCCCTAATATTCTCTCGCCCCCTATTTTTATTTCTCTCC
CCAAATAAAGGTGGGATCTTTATATTTCTCCCAATAAGTATACACAACCC
GGTGGCACAACATTTTTGGTAATTCTTTACGTCTCTACTCTTTTTTTTTA
AATG
CCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXATAAGAAATGGTTTGTTTAGAAC
ATAATAAATTGCAAACACACACACACACACACACACACACACACACACAT
ACACACAGAGATAGATAGCTTTAGTTACCCAAACCAGCAGTACACTGTGT
AAAATATTATATATGTGTGTGTATACATATATATACACATATATGTATAT
ATCATATACATACACATTTATATTTACATACATACAAACATACACATGCA
TAAAGATAATGTATATAAGTATAACTATATACATATATGTGTGTGAGTAT
GTATGTATAATGACTGTAATGGCTGTAAGGTAAGACCCCAATGAAGAAGA
ATACACATATTTTGGATATAAGGTATTGTAACACAGTGATCAGAACACAT
CTTGCATGAGTACAGCTATCTTTTATTATAGTAGAAGGTGCTATTCCCAT
GCTAGTCGAGCAAAACAACAAAAAAGAAAACTAGAAATTCAGTTATATTA
CCTAGAGTAGGACCCTTTATGTTGCAAAACTCACTGATGTGCAAGATGTT
CTTACCATTCTAATAATGGCATGATTACTCTGGGTTAATTGATCACTTAT
TATATTTGACACACAGTCTTCAGGACAGAAATGTATGCCTGGTCTGGTAA
CATTGATAAAAGGCCTCTAGATAGACACCTAGATACACTTATTATTAATA
TTTTGCTAAATGGTCTTTTGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no496_a19.b1 MSMg01no496_a19.b1 CHROMAT_FILE:
MSMg01no496_a19.b1 PHD_FILE: MSMg01no496_a19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:21:15 2005
         (144 letters)



>mm_chr1_150069757_150070300
          Length = 544

 Score =  255 bits (132), Expect = 7e-73
 Identities = 141/144 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttattaatgccaattgatagaaaaaatgaccactaaatttttctccctgaaaaatactag 60
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttattaatgccaattgatagaagaaatgaccactaaatttttctccctgaaaaatactag 260

                                                                       
Query: 61  ggcgacttctttatcagctctgtttgttatgcacatttccttgattgttgatgttaaagg 120
            | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgtgacttctttatcagctctgtttgttatgcacatttccttgattgttgatgttaaagg 320

                                   
Query: 121 taaatgtcttgactctatgattcc 144
           ||||||||||||||||||||||||
Sbjct: 321 taaatgtcttgactctatgattcc 344


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 144
Length of database: 544
Length adjustment: 8
Effective length of query: 136
Effective length of database: 536
Effective search space:    72896
Effective search space used:    72896
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)