Query= MSMg01no496_c24.b1 MSMg01no496_c24.b1 CHROMAT_FILE:
MSMg01no496_c24.b1 PHD_FILE: MSMg01no496_c24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:21:26 2005
(682 letters)
>mm_chr1_96515336_96516417
Length = 1082
Score = 1274 bits (659), Expect = 0.0
Identities = 674/679 (99%), Gaps = 2/679 (0%)
Strand = Plus / Plus
Query: 5 gaattccactcgt-ttcgtaataatagctgccactatcacaattgttggaggtaagtaag 63
||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccactcgtgtt-gtaataatagctgccactatcacaattgttggaggtaagtaag 263
Query: 64 caatatatatgcccatgttgttttcttcccaaggatactgctcatctcacttagaagaat 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 caatatatatgcccatgttgttttcttcccaaggatactgctcatctcacttagaagaat 323
Query: 124 gtgagccctcctaatatgtcttactatttagtgtaaaatatgaaggattttttgaaagtt 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 gtgagccctcctaatatgtcttactatttagtgtaaaatatgaaggattttttgaaagtt 383
Query: 184 tgaaaaagtgatatgttcagcaaaactaaattgtttgcccacactttgtatagtttgata 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tgaaaaagtgatatgttcagcaaaactaaattgtttgcccacactttgtatagtttgata 443
Query: 244 tatagagattattattggtgtttttcaatttcttgtagtctgtcttatcaacaaatagta 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tatagagattattattggtgtttttcaatttcttgtagtctgtcttatcaacaaatagta 503
Query: 304 tgacttctgaaggtcaaaatgaaataaaaatattttccatcagctagctcagtctctttt 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 tgacttctgaaggtcaaaatgaaataaaaatattttccatcagctagctcagtctctttt 563
Query: 364 aaatggcaaagtgtctggcaattgctttactgaaaatttaattttcttttcatatctttc 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 aaatggcaaagtgtctggcaattgctttactgaaaatttaattttcttttcatatctttc 623
Query: 424 atgctccatggttatataaatgactgtgtttgcaatcatgcttttccatagataaaagtc 483
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 624 atgctccatggttatataaatgacggtgtttgcaatcatgcttttccatagataaaagtc 683
Query: 484 ctttgggttcagtcattggttgaacacttaaagtaaatactggtaagaggttttataagc 543
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 684 ctttgggttcagtcattggttgaacacttaaagtaaatactggtaagagtttttataagc 743
Query: 544 aatatttttgccatttacatattcttgttatagtaaaattctttatattatcttaaaatt 603
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 744 aatatttttgccatttacatattcttgttatagtaaaattctttatactatcttaaaatt 803
Query: 604 aactttctctgtaaaaatttttcatactgccatttctcaatatttgttttctcaacctca 663
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 aactttctctgtaaaaatttttcatactgccatttctcaatatttgttttctcaacctca 863
Query: 664 ttgtattgattttcttttt 682
|||||||||||||||||||
Sbjct: 864 ttgtattgattttcttttt 882
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 682
Length of database: 1082
Length adjustment: 10
Effective length of query: 672
Effective length of database: 1072
Effective search space: 720384
Effective search space used: 720384
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no496_c24.g1 MSMg01no496_c24.g1 CHROMAT_FILE:
MSMg01no496_c24.g1 PHD_FILE: MSMg01no496_c24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:21:26 2005
(640 letters)
>mm_chr1_96655896_96656937
Length = 1042
Score = 1044 bits (540), Expect = 0.0
Identities = 603/630 (95%), Gaps = 16/630 (2%)
Strand = Plus / Minus
Query: 9 ttggtatgtgtttgtgatacacaaagaatgagggttgggttttttt-gggggttctgata 67
|||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||
Sbjct: 1042 ttggtatgtgtttgtgatacacaaagaatgagggtt-ggtttttttggggggttctgata 984
Query: 68 ctaccctagagcatgaccatcttagaaaaggaccacatctaagactgacttggtgcttct 127
||| ||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 983 ctatcctagagcatgactatcttagaaaaggaccacatctaaggctgacttggtgcttct 924
Query: 128 tcatataacaagtgtgatggatagagttttctaattcttttttgattttgtgaagctttg 187
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 923 tcatataacaagtgtgatggatagagttttctaattcttttttgattttgtgaagctttg 864
Query: 188 tcttgctttaattttggtggtgtgatggctattcctggttgtcaacttgactacatcttt 247
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 863 tcttgctttaattttggtggtgtgatggctattcctggttatcaacttgactacatc--- 807
Query: 248 tt----tgtactacaatccagaaatggaggacatgtttttcattttc--ttttttttttc 301
| || |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 806 -tagaatgaactacaatccagaaatggaggacatgtttttcattttcttttttttttttc 748
Query: 302 ttagactttgtaactttgtttaattacaggaatcttgttaaatctacaggaaccacatag 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 747 ttagactttgtaactttgtttaattacaggaatcttgttaaatctacaggaaccacatag 688
Query: 362 aaatttagaaaggtattcagttttcttatagtatttaataatatctttataattttgtta 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 687 aaatttagaaaggtattcagttttcttatagtatttaataatatctttataattttgtta 628
Query: 422 tcaatagtaattacagtgactataaaaacatttcctccttttgagaatttaatatatgaa 481
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 tcaataggaattacagtgactataaaaacatttcctccttttgagaatttaatatatgaa 568
Query: 482 taatgtattcacatcatttccacccctggcttttcccacccaattcttcccccaactccc 541
||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct: 567 taatgtattcacatcatttccacccctggcttttcccactcaattcttccctcaactccc 508
Query: 542 tcttgaattcattacttcttctataattatcagagagagagagagagactgagagagaga 601
|||||||||||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct: 507 tcttgaattcattacttcttctataattatcagagagagagagagaga--gacagagaga 450
Query: 602 gacagagagagagagactgagagacagaga 631
|| ||||||| |||||| |||||||||||
Sbjct: 449 gagagagagacagagac--agagacagaga 422
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 65
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 640
Length of database: 1042
Length adjustment: 10
Effective length of query: 630
Effective length of database: 1032
Effective search space: 650160
Effective search space used: 650160
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
