BAC Information

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BAC

Clone NameMSMg01-496I06
Chromosome1 (Build37)
Map Location 177,152,899 - 177,153,282
singlet/doubletsinglet
Overlap geneRgs7
Upstream geneSpna1, Olfr419, 1810030J14Rik, Olfr417, GA_x5J8B7W3B3M-312879-313274, GA_x5J8B7W3B3M-318013-318414, Olfr415, Olfr414, Olfr220, Fmn2, Grem2
Downstream geneFh1, Kmo, Opn3, Chml, Wdr64, Exo1, Gm104, Pld5, B020018G12Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-496I06.T7 (MSMg01no496_i06.b1)MSMg01-496I06.TJ (MSMg01no496_i06.g1)
ACCAG573302AG573303
length745748
length of high quality
(start - end)
655 (55 - 709)645 (84 - 728)
definitionCHROMAT_FILE: MSMg01no496_i06.b1 PHD_FILE: MSMg01no496_i06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:21:52 2005CHROMAT_FILE: MSMg01no496_i06.g1 PHD_FILE: MSMg01no496_i06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:21:52 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNNNNAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXCGCGGAATTCTCACTTGCGGAATACCGAATGGAGGAACTGGGAGAC
TCTTATGGAAGAATAGGAGGAAAGATTGAAGGCCACTAAGGAGATTAAAA
ACTCTACAAGAAAACTAACAGAGTCAACTAACCTGGAATCTTGGGGCTCT
CAGAGTCTGAACTACCAGACAACGAACATATATTGGTTGGACCTAGGCCA
CCCTGCACATATGTAGCAAATGTGCAACTTGATCTTCATGTGGGTCTTGA
ACAATTGGAGTGGGAGCTATCCCTTAAGCTGTTGCCTGTATGTGTGATAT
GTTCTTCTAGCTGGGTTGCTTTGTCTGGTCTCAGTGGGAGAAGAAGCACC
TAGCCTCACACAGAAGTTACAAGGTTGGGGGCCCCCTGCAAGCTCAGAGG
AGAAGGGGAGGGGGCATGAGGGAAGGGCCAGGGGAGAGTTCACTGAGTGG
GGTGTAAAGTGAATAAGTTAAAAAGTAAAATTAGATTTAAAGAATATGGT
AGACGATTATCCTTAAGCTGTTCTTATGATTATGCATGCCTGAGAAACTG
GAGACTTCATGTAATGTGAGTGACATATGAAAATATTTTTGTAGTAGATG
TAAGAGCCAAGCTCAGGATACTAGGTTAACTATACCTAGTCCTGTATTTC
TTTCTGTAATTTTGTTGTTGTTGNTGTTGTTGGTTGTTTGNTTGG
NNAAAGGCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAGAAGTTAGACACCAA
CAACCTAAATTAAAAAATGGGATAAATAGCTAAACAGAGAATTCTCAACA
GAGGAAACTCAATGACTGAGAAGCACTTAAAGAAATATTCATAGTCCTTA
TTCATCAGGTAAAAACTAATCAAAACAACTTTGAGGTTCCATCTTATACC
CACCAGAAAGGCTAAGATCAAAAACTCAAGAGGGAGCACATTCTGGTGAT
GATGTGGCCCAAGGGGAACACTCCATTGTTGATGGGAGTGCAAAGTTGTA
CAACCATTTTGGAAATCAATTTGGAGGTTTCTCAGAAAACTTGGAATAGT
TCAATGTCAAACCCAGGTATACCACTCCTTGCCATATACCCAAACCATGA
TCCACCATGTTACAAAGACGCTTGCTCAACTATTTTCATAGCAGCTTTAC
TCATAATAACCAGGAACTGGAAACAACCTGGATGTCCCTCAATTGAAGTA
TGGATAAAGGAAATGTGCTACATCTATATAATGGAATATTATTCAGCTGT
GAAAATCACAAAGACATTATGAGTTTTGCAGGCAAATGGATAGAACTTGA
GAATATCTTCCTAAGTGAGGGTACTCAGTCCCAAAAGGACATGCATGGAA
TGTACCCACTTAGAAGGGGATATTAACCATAAAATACAGGATACTCAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no496_i06.b1 MSMg01no496_i06.b1 CHROMAT_FILE:
MSMg01no496_i06.b1 PHD_FILE: MSMg01no496_i06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:21:52 2005
         (655 letters)



>mm_chr1_177152229_177153283
          Length = 1055

 Score =  743 bits (384), Expect = 0.0
 Identities = 384/384 (100%)
 Strand = Plus / Minus

                                                                        
Query: 272  aagctgttgcctgtatgtgtgatatgttcttctagctgggttgctttgtctggtctcagt 331
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1054 aagctgttgcctgtatgtgtgatatgttcttctagctgggttgctttgtctggtctcagt 995

                                                                        
Query: 332  gggagaagaagcacctagcctcacacagaagttacaaggttgggggccccctgcaagctc 391
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 994  gggagaagaagcacctagcctcacacagaagttacaaggttgggggccccctgcaagctc 935

                                                                        
Query: 392  agaggagaaggggagggggcatgagggaagggccaggggagagttcactgagtggggtgt 451
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 934  agaggagaaggggagggggcatgagggaagggccaggggagagttcactgagtggggtgt 875

                                                                        
Query: 452  aaagtgaataagttaaaaagtaaaattagatttaaagaatatggtagacgattatcctta 511
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 874  aaagtgaataagttaaaaagtaaaattagatttaaagaatatggtagacgattatcctta 815

                                                                        
Query: 512  agctgttcttatgattatgcatgcctgagaaactggagacttcatgtaatgtgagtgaca 571
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 814  agctgttcttatgattatgcatgcctgagaaactggagacttcatgtaatgtgagtgaca 755

                                                                        
Query: 572  tatgaaaatatttttgtagtagatgtaagagccaagctcaggatactaggttaactatac 631
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 754  tatgaaaatatttttgtagtagatgtaagagccaagctcaggatactaggttaactatac 695

                                    
Query: 632  ctagtcctgtatttctttctgtaa 655
            ||||||||||||||||||||||||
Sbjct: 694  ctagtcctgtatttctttctgtaa 671


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 655
Length of database: 1055
Length adjustment: 10
Effective length of query: 645
Effective length of database: 1045
Effective search space:   674025
Effective search space used:   674025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)