BAC Information

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BAC

Clone NameMSMg01-496I15
Chromosome1 (Build37)
Map Location 155,601,438 - 155,602,130
singlet/doubletsinglet
Overlap geneRnasel
Upstream geneApobec4, Arpc5, Ncf2, Smg7, EG668097, Nmnat2, Lamc2, Lamc1, EG667795, EG626058, 1700012A16Rik, Dhx9, Npl, LOC626096, Rgs8, Rgs16
Downstream geneLOC100043347, Rgsl1, 5830403L16Rik, EG433365, Teddm1, LOC100043357, Glul, LOC100043359, Cacna1e
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-496I15.T7 (MSMg01no496_i15.b1)MSMg01-496I15.TJ (MSMg01no496_i15.g1)
ACCAG573320AG573321
length762769
length of high quality
(start - end)
711 (49 - 759)666 (75 - 740)
definitionCHROMAT_FILE: MSMg01no496_i15.b1 PHD_FILE: MSMg01no496_i15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:21:54 2005CHROMAT_FILE: MSMg01no496_i15.g1 PHD_FILE: MSMg01no496_i15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:21:54 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NACTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTCCTTTTCACATGAAGGCAGAAGTCGATGCTCGGGACAACAT
GGGCAGAAATGCCCTGATCCGTACTCTGCTGAACTGGGATTGTGAAAATG
TGGAGGAGATTACTTCAATCCTGATTCAGCACGGGGCTGATGTTAACGTG
AGAGGAGAAAGAGGGAAAACACCCCTCATCGCAGCAGTGGAGAGGAAGCA
CACAGGCTTGGTGCAGATGCTCCTGAGTCGGGAAGGCATAAACATAGATG
CCAGGGATAACGAGGGCAAGACAGCTCTGCTAATTGCTGTTGATAAACAA
CTGAAGGAAATTGTCCAGTTGCTTCTTGAAAAGGGAGCTGATAAGTGTGA
CGATCTTGTTTGGATAGCCAGGAGGAATCATGACTATCACCTTGTAAAGC
TTCTCCTCCCTTATGTAGCTAATCCTGACACCGACCCTCCTGCTGGAGAC
TGGTCGCCTCACAGTTCACGTTGGGGGACAGCCTTGAAAAGCCTCCACAG
TATGACTCGACCCATGATTGGCAAACTCAAGATCTTCATTCATGATGACT
ATAAAATTGCTGGCACTTCCGAAGGGGCTGTCTACCTAGGGATCTATGAC
AATCGAGAAGTGGCTGTGAAGGTCTTCCGTGAGAATAGCCCACGTGGATG
TAAGGAAGTCTCTTGTCTGCGGGACTGCGGTGACCACAGTAACTTAGTGG
CTTTCTATGGAN
NTCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXTTGCCCGCGGAAGTCAAACCCAACATGGATAACTTAGTAA
GACCCTGTCTCAAAATCAAAAGGAGAAAGATGCAGGGCTGGCGAGAAGGC
TCAGCGGGTAGGAGCATTTGCTGCTCTTCCAGAGGGCTCAGTTCCCAGCA
CAGGGCAGCTCACAGGTGTGTGTAACTGCAGCTCCTGGGCATCTTTGTCT
CTGACCTTCAAACACTCTTGCACTCATGTTCACATGCAGATACTCATACC
TGCATTTATTTAATGTATACTTGTGTTTGGTCCACATATATGCTCCATAT
CCCATGTATACCTGGCACCCACGGAAGCCAGAAGCGGGTATTGAATCCCC
CCTGGGAGTGGGGTTACAGATGGTTGTGAGCTGCCATATGGGTGCTGGGA
ATTGAACCTGGGTCTTTTGGAAGAGCAGTCAATGCTCTTAACCACTGAGC
CATCTATCTTTCCAGCCCTACCTACATATAATTTTAAAAAGTAATCTTAT
AAAACGTTTTAAGTCAGCTGGATGTGGTGGCACACACCTTCGATCCCAGC
ACTGTAAATCTTGTCTTGAAAAACAACCAAGAAAATGTTTTAAATCAAAA
GAGGAATGTGGTAGAGGGCCTGCCTAGCATCCACAAGGTCCTAGATTCTA
TTACCTGTCCATAATAATAATAAAAATAAAGGAAGGAGGGNAAGGGGAAG
AGAAAAAGANANANNNNNN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no496_i15.b1 MSMg01no496_i15.b1 CHROMAT_FILE:
MSMg01no496_i15.b1 PHD_FILE: MSMg01no496_i15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:21:54 2005
         (711 letters)



>mm_chr1_155601220_155602330
          Length = 1111

 Score = 1340 bits (693), Expect = 0.0
 Identities = 693/693 (100%)
 Strand = Plus / Plus

                                                                       
Query: 19  acatgaaggcagaagtcgatgctcgggacaacatgggcagaaatgccctgatccgtactc 78
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 219 acatgaaggcagaagtcgatgctcgggacaacatgggcagaaatgccctgatccgtactc 278

                                                                       
Query: 79  tgctgaactgggattgtgaaaatgtggaggagattacttcaatcctgattcagcacgggg 138
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 tgctgaactgggattgtgaaaatgtggaggagattacttcaatcctgattcagcacgggg 338

                                                                       
Query: 139 ctgatgttaacgtgagaggagaaagagggaaaacacccctcatcgcagcagtggagagga 198
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 ctgatgttaacgtgagaggagaaagagggaaaacacccctcatcgcagcagtggagagga 398

                                                                       
Query: 199 agcacacaggcttggtgcagatgctcctgagtcgggaaggcataaacatagatgccaggg 258
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 agcacacaggcttggtgcagatgctcctgagtcgggaaggcataaacatagatgccaggg 458

                                                                       
Query: 259 ataacgagggcaagacagctctgctaattgctgttgataaacaactgaaggaaattgtcc 318
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 ataacgagggcaagacagctctgctaattgctgttgataaacaactgaaggaaattgtcc 518

                                                                       
Query: 319 agttgcttcttgaaaagggagctgataagtgtgacgatcttgtttggatagccaggagga 378
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 agttgcttcttgaaaagggagctgataagtgtgacgatcttgtttggatagccaggagga 578

                                                                       
Query: 379 atcatgactatcaccttgtaaagcttctcctcccttatgtagctaatcctgacaccgacc 438
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 579 atcatgactatcaccttgtaaagcttctcctcccttatgtagctaatcctgacaccgacc 638

                                                                       
Query: 439 ctcctgctggagactggtcgcctcacagttcacgttgggggacagccttgaaaagcctcc 498
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 639 ctcctgctggagactggtcgcctcacagttcacgttgggggacagccttgaaaagcctcc 698

                                                                       
Query: 499 acagtatgactcgacccatgattggcaaactcaagatcttcattcatgatgactataaaa 558
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 699 acagtatgactcgacccatgattggcaaactcaagatcttcattcatgatgactataaaa 758

                                                                       
Query: 559 ttgctggcacttccgaaggggctgtctacctagggatctatgacaatcgagaagtggctg 618
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 759 ttgctggcacttccgaaggggctgtctacctagggatctatgacaatcgagaagtggctg 818

                                                                       
Query: 619 tgaaggtcttccgtgagaatagcccacgtggatgtaaggaagtctcttgtctgcgggact 678
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 819 tgaaggtcttccgtgagaatagcccacgtggatgtaaggaagtctcttgtctgcgggact 878

                                            
Query: 679 gcggtgaccacagtaacttagtggctttctatg 711
           |||||||||||||||||||||||||||||||||
Sbjct: 879 gcggtgaccacagtaacttagtggctttctatg 911


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 711
Length of database: 1111
Length adjustment: 10
Effective length of query: 701
Effective length of database: 1101
Effective search space:   771801
Effective search space used:   771801
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)